Click here to switch to the map view.

The map label for this gene is yciU [C]

Identifier: 29142088

GI number: 29142088

Start: 1709836

End: 1710165

Strand: Direct

Name: yciU [C]

Synonym: t1652

Alternate gene names: 29142088

Gene position: 1709836-1710165 (Clockwise)

Preceding gene: 29142087

Following gene: 29142095

Centisome position: 35.68

GC content: 50.61

Gene sequence:

>330_bases
ATGGAAATGGATCTGAACAATCGCCTGACTGAAGACGAAACGCTTGAGCAGGCTTACGATATTTTTCTTGAGCTGGCGGC
GGATAATCTTGATCCGGCTGATATCATTCTGTTCAATTTGCAATTCGAGGAGCGCGGCGGCGCGGAGTTGTTTGATCCCG
CTGAAGACTGGCAAGAGCACGTCGATTTTGACCTGAATCCAGACTTTTTTGCCGAGGTGGTGATTGGCCTGGCGGATACC
GAAGACGGCGAAATTAACGACATTTTTGCCCGCGTTCTGCTGTGCCGGGAAAAGGACCACAAGCTGTGCCATATTCTCTG
GCGCGAATAA

Upstream 100 bases:

>100_bases
GGTAAAACGTCCGTTATGGCAGCGTATTACCGAGCGATTGTTTTACTTCTTTAGTCCATTGCTGTAAAACGTGACCAACA
TGAGTAAACAGGTAGTCACT

Downstream 100 bases:

>100_bases
GCGGTTCAGGCCGGATGGCGTCTGATAGCGCCCTCCGGCAAGCCTGTTTAATCCGGTAGCTTACTGCCGCATCGGTTACA
ATATTGCGCGCTATGTTCAT

Product: dsDNA-mimic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADT
EDGEINDIFARVLLCREKDHKLCHILWRE

Sequences:

>Translated_109_residues
MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADT
EDGEINDIFARVLLCREKDHKLCHILWRE
>Mature_109_residues
MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADT
EDGEINDIFARVLLCREKDHKLCHILWRE

Specific function: Unknown

COG id: COG3099

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0263 family [H]

Homologues:

Organism=Escherichia coli, GI87081860, Length=109, Percent_Identity=93.5779816513761, Blast_Score=212, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007376
- ProDom:   PD020447 [H]

Pfam domain/function: PF04269 DUF440 [H]

EC number: NA

Molecular weight: Translated: 12729; Mature: 12729

Theoretical pI: Translated: 3.72; Mature: 3.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPAEDWQEH
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
VDFDLNPDFFAEVVIGLADTEDGEINDIFARVLLCREKDHKLCHILWRE
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPAEDWQEH
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
VDFDLNPDFFAEVVIGLADTEDGEINDIFARVLLCREKDHKLCHILWRE
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA