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The map label for this gene is ykgA [H]

Identifier: 29142015

GI number: 29142015

Start: 1635077

End: 1635928

Strand: Direct

Name: ykgA [H]

Synonym: t1575

Alternate gene names: 29142015

Gene position: 1635077-1635928 (Clockwise)

Preceding gene: 29142010

Following gene: 29142016

Centisome position: 34.12

GC content: 38.62

Gene sequence:

>852_bases
ATGAAAAGAGCCATAATAGTCTCAGTATTAGAGCAAATAGAAAAAAATCTTGAAGAGAGGATTGATATTGAAAAGTTGGT
TGTTATAACAGGTTATTCGCGAAGGAGTTTGCAGGATTTTTTTAAAGAAAAGTGTGGCGTCTCTATCGGAAAATATATCA
GACAACGCAAGTTGAGCAGAAGCGCCACTCTGCTAAAGCTGACCTCTCAGTCGGTCACAGATATCGCGTTCAGAATGGGG
TTTGATTCAGTGCAGTCCTATAGTCGAGAGTTCAAAAAAACATTTGGCGTCAATCCCAATAACTATCGCAAGGCTGATTT
CTGGGATCTCAGAAACCTACGGCCTCCCTACTGGCTTGACTGTGATGGGCATTATCAGTTCGAAATTTGTCAGCTTACGT
CAAAAGAAATTTTCGGATTTCAAACATCTCATCAGATCGCAACAAATGACCTTCCTAAAAAAGCGTCGCCTATAAAATGG
AAAATCATTCATGAGACGCTCAGGACGTGGGGCGAAAATGTGTATTGTCTCTCGTCTTTTAAGCCGGATAATACCAAAGA
CCAGGTCATCGCCGTAAGCAGTTTTTTTGGTATGGAACATAATTCCGTCGATGGAGGAAAAATACCCATGTCGAGGGTAA
TAAAATGTGGTAAATATGCAAAATTCCATTTCGTTGGTCATAAGGAACAATATCAACAATTTTCCAATACAATATATATG
TGTATATTGCCAAAACTGAATATTATCAGAAGAGAAGGAGAAGATATTGAATACTTCCATTTGGCATCCGTCCAAAAGCA
ACAGAATAATGAATCCATTGTCGATCTTTATTATTACATCCCTGTACTGTAA

Upstream 100 bases:

>100_bases
GTTTTGCCAGAAAAGCTAACAACCCCCCACTGGTTTAATAACACCGTATGTCAAACACCTTAAATGTTTATATTTTCGGC
TTCAATAAAGAGGAATGATG

Downstream 100 bases:

>100_bases
TGACTTCGTACTATCCACGCATTTCATCTGAAAAGTCTTCTCTTTTCAGAACGGTAATAAAACTCTCAGTATTGATTCTG
GTAAAATAAGTGACTATTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKRAIIVSVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMG
FDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDGHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKW
KIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTIYM
CILPKLNIIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL

Sequences:

>Translated_283_residues
MKRAIIVSVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMG
FDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDGHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKW
KIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTIYM
CILPKLNIIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
>Mature_283_residues
MKRAIIVSVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMG
FDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDGHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKW
KIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTIYM
CILPKLNIIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=283, Percent_Identity=28.9752650176678, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI87081928, Length=102, Percent_Identity=41.1764705882353, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790497, Length=99, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33133; Mature: 33133

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIIVSVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSR
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
SATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLD
HHHEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEE
CDGHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLRTWGENVYCLSSF
CCCCEEEEEEEECHHHHCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
KPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTIYM
CCCCCCCCEEEEHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHCEEEE
CILPKLNIIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
EEECCCHHHHCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKRAIIVSVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSR
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
SATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLD
HHHEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEE
CDGHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLRTWGENVYCLSSF
CCCCEEEEEEEECHHHHCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
KPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTIYM
CCCCCCCCEEEEHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHCEEEE
CILPKLNIIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
EEECCCHHHHCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]