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The map label for this gene is sgcR [H]

Identifier: 29141971

GI number: 29141971

Start: 1582055

End: 1582846

Strand: Direct

Name: sgcR [H]

Synonym: t1527

Alternate gene names: 29141971

Gene position: 1582055-1582846 (Clockwise)

Preceding gene: 29141970

Following gene: 29141972

Centisome position: 33.01

GC content: 51.64

Gene sequence:

>792_bases
ATGAGCCAACAGCGCCCCGACCGTATCAAACAGATGTTGCATTACCTTTGGCAACACAGGCACCTCTCAACACAACAAGC
TATTGAGCTTTTTGGCTATGCAGAGGCAACCGTGCGCCGGGATTTTCACTATATCGCCAGCCGTTATCCCGGTATGGTTC
GCGGCCATGGTTGTATTGACTTTGACGACAGTACGGAAGATAAAGAATATGTTTTCGACGTTAAGCGGACGTTACAAAGC
GAGGCGAAACGCGAAATTGCCGCCCTCGCCCGCACGTTCATCAAGGATGGAGACTGCTTTTTTCTCGACTCTGGCTCCAC
CTGTCTGGAACTGGCAAAATGTCTGGTCGACGCCAAAGTAAAAGTCATTTGCAATGACATCAAAATCGCTAACGAACTGG
GTGGCTTCCCACACGTAGAGAGCTACATTATTGGCGGACTGATTCGCCCCGGCTACTTTTCGGTGGGCGAGAGTCTGGCG
CTGGAGATGATTAACGCCTTTGCCGTTGAACGCGCCTTTATCTCTTGCGATGCGCTGTCGATTGAAACGGGCATCACCAA
CGCTACCATGTTTGAAGTAGGCGTCAAAACGCGCATTATTCAGCGCTCACGCGAGGTCATATTGATGGCCGATCATTCAA
AGTTTGATACTGTAGAACCCCATGCGGTGGCGACGCTGTCCTGTATTACTACCATTCTTAGCGACAGTGCGCTCCCGTCT
GCTATCGCCCGACGTTATCAGCAGGCGGGATGCCGTCTCATCATGTCAGACCCCTCATCAGGAGCGCGTTAA

Upstream 100 bases:

>100_bases
AGGCGCCCAGCATCTGGTGATTGGCCGGGCGTTGTTCACGACGGCGAACTATGATGTGACATTGTCACAATTCACCGCGC
TATAAAGGAGTCATATGCTG

Downstream 100 bases:

>100_bases
TGGACATCAGGCAAATGAACAAAACCCATCTGGAGCACTGGCGCGGATTGCGAAAACAGCTCTGGCCTGGTCACCCGGAT
GACGCCCATCTGGCGGACGG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHYIASRYPGMVRGHGCIDFDDSTEDKEYVFDVKRTLQS
EAKREIAALARTFIKDGDCFFLDSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLA
LEMINAFAVERAFISCDALSIETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPS
AIARRYQQAGCRLIMSDPSSGAR

Sequences:

>Translated_263_residues
MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHYIASRYPGMVRGHGCIDFDDSTEDKEYVFDVKRTLQS
EAKREIAALARTFIKDGDCFFLDSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLA
LEMINAFAVERAFISCDALSIETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPS
AIARRYQQAGCRLIMSDPSSGAR
>Mature_262_residues
SQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHYIASRYPGMVRGHGCIDFDDSTEDKEYVFDVKRTLQSE
AKREIAALARTFIKDGDCFFLDSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLAL
EMINAFAVERAFISCDALSIETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPSA
IARRYQQAGCRLIMSDPSSGAR

Specific function: Putative transcriptional regulator for the sgcREAQCX region [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790753, Length=255, Percent_Identity=89.8039215686275, Blast_Score=486, Evalue=1e-139,
Organism=Escherichia coli, GI1789059, Length=256, Percent_Identity=27.34375, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=24, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082344, Length=250, Percent_Identity=22.4, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789829, Length=242, Percent_Identity=23.9669421487603, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789170, Length=229, Percent_Identity=23.1441048034935, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787063, Length=244, Percent_Identity=25.4098360655738, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI226510968, Length=245, Percent_Identity=26.530612244898, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787540, Length=234, Percent_Identity=25.6410256410256, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=25, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29368; Mature: 29237

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHYIASRYPGMVRGHGCID
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEC
FDDSTEDKEYVFDVKRTLQSEAKREIAALARTFIKDGDCFFLDSGSTCLELAKCLVDAKV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
KVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLALEMINAFAVERAFISCDALS
HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPS
ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
AIARRYQQAGCRLIMSDPSSGAR
HHHHHHHHCCCEEEEECCCCCCC
>Mature Secondary Structure 
SQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHYIASRYPGMVRGHGCID
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEC
FDDSTEDKEYVFDVKRTLQSEAKREIAALARTFIKDGDCFFLDSGSTCLELAKCLVDAKV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
KVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLALEMINAFAVERAFISCDALS
HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPS
ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
AIARRYQQAGCRLIMSDPSSGAR
HHHHHHHHCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]