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The map label for this gene is slyB [H]

Identifier: 29141772

GI number: 29141772

Start: 1374773

End: 1375240

Strand: Reverse

Name: slyB [H]

Synonym: t1313

Alternate gene names: 29141772

Gene position: 1375240-1374773 (Counterclockwise)

Preceding gene: 29141778

Following gene: 29141770

Centisome position: 28.7

GC content: 54.06

Gene sequence:

>468_bases
ATGATTAAACGTGTACTGGCCGTTTCACTGATGGGGTTATCCTTAGCTGGGTGTGTTAACAATGATAGCCTTTCGGGTGA
TGTTTATACCGCATCCGAGGCTAAACAAGTTCAGAATGTAACGTACGGTACTATCGTTAACGTTCGTCCGGTTCAAATTC
AGGGCGGTGATGATTCTAACGTGATTGGCGCTATCGGCGGCGCGGTGTTGGGCGGATTCCTCGGCAACACTATCGGCGGC
GGTACGGGTCGTTCACTGGCGACCGCGGCAGGCGCGGTGGCTGGTGGCGTAGCGGGCCAGGGCGTCCAGAGCGCAATGAA
TAAAACCCAGGGTGTGGAACTGGAAATTCGTAAAGACGATGGCAACACCATTATGGTTGTGCAGAAACAAGGAAATACGC
GTTTCTCGGCAGGTCAGCGTGTCGTGCTGGCCAGCAACGGCAGCCAGGTTACTGTCTCTCCACGCTAA

Upstream 100 bases:

>100_bases
ATTCTTTCGGCAGAAGATATGACCTTAACTGCATAAATGCCATATAATTTAGCTATAGGGATGCTGAAATAGCGTTTCGT
GAAGAACAGGAGATGGGTAA

Downstream 100 bases:

>100_bases
ACCAGGCTTTACGTGTGGTCACATGGCCACACGTATGCCCCTGCACCTCAATCGTGAGAGTGCAATTCCATAATGTTGTG
TTCAAGTTTAGCGACAAGTT

Product: outer membrane lipoprotein SlyB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGG
GTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR

Sequences:

>Translated_155_residues
MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGG
GTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR
>Mature_155_residues
MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGG
GTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR

Specific function: Unknown

COG id: COG3133

COG function: function code M; Outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pcp/slyB lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI48994887, Length=155, Percent_Identity=94.8387096774194, Blast_Score=257, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 15548; Mature: 15548

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSN
CCHHHHHHHHHHHEEEEECCCCCCCCCEEECHHHHHHHCCEEEEEEEEEEEEEECCCCCC
VIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
EEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECC
GNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR
CCEEEEEECCCCCEECCCCEEEEECCCCEEEEECC
>Mature Secondary Structure
MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSN
CCHHHHHHHHHHHEEEEECCCCCCCCCEEECHHHHHHHCCEEEEEEEEEEEEEECCCCCC
VIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
EEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECC
GNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR
CCEEEEEECCCCCEECCCCEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]