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The map label for this gene is ydhO [H]

Identifier: 29141759

GI number: 29141759

Start: 1364526

End: 1365380

Strand: Reverse

Name: ydhO [H]

Synonym: t1300

Alternate gene names: 29141759

Gene position: 1365380-1364526 (Counterclockwise)

Preceding gene: 29141761

Following gene: 29141758

Centisome position: 28.49

GC content: 51.23

Gene sequence:

>855_bases
ATGAATCGCCTGCCTTTAACAGAGGATTGCTCAGTGGCGCGGATAAACAAAATCTCGATCACGCTCTGTGCTTTACTTTT
TACTACTCTCCCCTTTACGCCAATGGCCCATGCTTCCAGGCAAGCCAAAGCGACGCCTGCTGTTTCTCATGTCACGAAAA
CGGCAGATAAAAAGAAAAGCACAACTAAAAAGATCAGTAAAACCAGCAAAAAAAACGTAAAAAAAACCTCAAAAACCAGC
CGTTCTTCTTCCGCTTCTACGCCAAAACGTACCACCGCCGCCACAAAATCTCGTCATACGACGCATCGTCGTAACAGAAC
CGCGCCCACGTCAATCGCCGCCCTCGACGTAACGGAAAAATGCACGACGCGTAAAGGCCGTAAGCCGCACTGCGTGAAGG
GGAAAGGAACATTGCCGGTCTCTATTGCCGATGCGCATCGTGCAAAAGTACAAAAGGCGACGAAAACCGCGATGTCCAAG
CTCATGAATCAGATTGGTAAACCGTATCACTGGGGAGGCGCATCGCCGCGCACCGGTTTTGATTGCAGCGGTCTGGTTTA
TTATGCCTATAAAGATTTAGTGAAGATCCGTATCCCCCGAACGGCGAATGAGATGTATCACCTGCGTGACGCGGCCCCCA
TTGAGCGTAGCGAGTTGAAAAACGGCGATCTGGTGTTCTTCCGTACACAGGGGCGCGGCACCGCTGATCACGTTGGCGTC
TATGTCGGCAACGGTAAGTTTATCCAGTCTCCGCGCAGCGGTCAGGAAATTAAGATCACCTCACTGAACGAAGAGTACTG
GCAGCGTCATTATGTCGGCGCCCGCCGGGTGATGACGCCTAAAACAATTCGCTAA

Upstream 100 bases:

>100_bases
TTACATCTGTTAACGAAACATAGCTTCAGAAACCAAAAGCAATTACCAATCTGTGCTTTTGTAGATTAGAATTATCAGGT
TTTGTAAATCATACGCAGGC

Downstream 100 bases:

>100_bases
TATTTTATCCTGTCGTTTAACGACAGGATAACTTCTTCTTTTGCGCCACCTCTCAATTTGCTACCCTATCCTTACGCGCA
CCAGGGTTATTGTGCGTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTS
RSSSASTPKRTTAATKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK
LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR

Sequences:

>Translated_284_residues
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTS
RSSSASTPKRTTAATKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK
LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
>Mature_284_residues
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTS
RSSSASTPKRTTAATKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK
LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=279, Percent_Identity=70.2508960573477, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1786421, Length=267, Percent_Identity=33.7078651685393, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1788501, Length=125, Percent_Identity=37.6, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788001, Length=126, Percent_Identity=34.9206349206349, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 31525; Mature: 31525

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKS
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
TTKKISKTSKKNVKKTSKTSRSSSASTPKRTTAATKSRHTTHRRNRTAPTSIAALDVTEK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHH
CTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWGGASPRTGF
HHHCCCCCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
DCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
CCCCCHHHEECCEEEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEE
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
EECCCEEEECCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC
>Mature Secondary Structure
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKS
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
TTKKISKTSKKNVKKTSKTSRSSSASTPKRTTAATKSRHTTHRRNRTAPTSIAALDVTEK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHH
CTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWGGASPRTGF
HHHCCCCCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
DCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
CCCCCHHHEECCEEEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEE
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
EECCCEEEECCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]