Click here to switch to the map view.

The map label for this gene is sseA [H]

Identifier: 29141726

GI number: 29141726

Start: 1338007

End: 1338333

Strand: Direct

Name: sseA [H]

Synonym: t1265

Alternate gene names: 29141726

Gene position: 1338007-1338333 (Clockwise)

Preceding gene: 29141725

Following gene: 29141727

Centisome position: 27.92

GC content: 40.98

Gene sequence:

>327_bases
ATGATGATAAAGAAAAAGGCTGCGTTTAGTGAATATCGTGATTTAGAGCAAAGTTACATGCAGCTAAATCACTGTCTTAA
AAAATTTCACCAAATCCGGGCTAAGGTGAGTCAACAGCTTGCTGAAAGGGCAGAGAGCCCCAAAAAGAGCAGAGAGACAG
AGAGTATTCTTCATAACCTATTTCCACAAGGCGTTGCCGGGGTTAACCAGGAGGCCGAGAAGGATTTAAAGAAAATAGTA
AGTTTGTTTAAACAACTTGAAGTACGACTGAAACAACTTAATGCTCAAGCCCCGGTGGAGATACCGTCAGGAAAAACAAA
AAGGTAA

Upstream 100 bases:

>100_bases
ATTTTGAGCACTGCCCAGGTTCAAAATGGCAAGTAAAATAGCCCTAATGGGACAGGCTCTTAGTTAGCACGTTAATTATC
TATCGTGTATATGGAGGGGA

Downstream 100 bases:

>100_bases
AGCATAATGTCTTCAGGAAACATCTTATGGGGAAGTCAAAACCCTATTGTGTTTAAAAATAGCTTCGGCGTCAGCAACGC
TGATACCGGGAGCCAGGATG

Product: pathogenicity island protein

Products: NA

Alternate protein names: TTSS chaperone sseA; Secretion system effector A [H]

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIV
SLFKQLEVRLKQLNAQAPVEIPSGKTKR

Sequences:

>Translated_108_residues
MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIV
SLFKQLEVRLKQLNAQAPVEIPSGKTKR
>Mature_108_residues
MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIV
SLFKQLEVRLKQLNAQAPVEIPSGKTKR

Specific function: Functions as a type III secretion system (TTSS) chaperone, which is required for sseB and sseD accumulation and secretion. May have a direct role in secretion of sseB and sseD, or may facilitate their correct folding, for efficient secretion and function.

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable). Note=May associate with the inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12464; Mature: 12464

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQAPVEIPSGKTKR
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQAPVEIPSGKTKR
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9786193; 9786194; 11677609 [H]