Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
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Accession | NC_004631 |
Length | 4,791,961 |
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The map label for this gene is ydjA [H]
Identifier: 29141641
GI number: 29141641
Start: 1242818
End: 1243369
Strand: Direct
Name: ydjA [H]
Synonym: t1175
Alternate gene names: 29141641
Gene position: 1242818-1243369 (Clockwise)
Preceding gene: 29141637
Following gene: 29141642
Centisome position: 25.94
GC content: 56.52
Gene sequence:
>552_bases ATGGATGCACTAGAACTGCTGGTCAACCGTCGCAGCGCCTCTCGTCTCGCAGAACCGGCGCCTGTCGGAGAGCAATTACA GAACATTCTGCGGGCGGGAATGCGTGTTCCCGATCATAAATCTCTACAGCCGTGGCGTTTTTTTGTGATTGAAGGAGAGG GGCGCGACCGCTTCAGCGCCGTGCTTGAACAAGGCGCTGTCGCTGCCGGGGGGGATGAGAAAGCGATCGAAAAAGCGCGT AATGCGCCGTTTCGCGCGCCGCTGATCATTACCGTGGTGGCGAAATGCGAAGAAAACCATAAGGTTCCCGTGTGGGAACA GGAGATGTCTGCCGGATGCGCGGTGATGGCGATGCAAATGGCAGCGATTGCGCAAGGGTTTAATGGTATCTGGCGTAGCG GCGCATTAACGGAGAGCGCTATCGTGCGGGAAGCCTTTGAGTGCCGTCCTCAGGATAAAATTGTTGGTTTTCTCTATCTC GGCACGCCGCAGCTCAAAGCGTCAACGACGATCAGTACCCCCGACCCCACGCCGTTTGTGCGTTATTTCTGA
Upstream 100 bases:
>100_bases ACCCATCAGGCAGTTGTCAGCAGGAATCACTGCCTGCGCTGTAACAAAATCCGCTCCCGTGTTAATTTTGTGAATAAATA TCATTGCTGGAGTTAATCAA
Downstream 100 bases:
>100_bases CGCTGAGGGATAAAACTGTCTGGATTCTGAGCAAAGGCGCGGTAATTCAGACAGTGATACTTACCACATCAGGGAATGAG CGCTACCATAGCGCGAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQPWRFFVIEGEGRDRFSAVLEQGAVAAGGDEKAIEKAR NAPFRAPLIITVVAKCEENHKVPVWEQEMSAGCAVMAMQMAAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYL GTPQLKASTTISTPDPTPFVRYF
Sequences:
>Translated_183_residues MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQPWRFFVIEGEGRDRFSAVLEQGAVAAGGDEKAIEKAR NAPFRAPLIITVVAKCEENHKVPVWEQEMSAGCAVMAMQMAAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYL GTPQLKASTTISTPDPTPFVRYF >Mature_183_residues MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQPWRFFVIEGEGRDRFSAVLEQGAVAAGGDEKAIEKAR NAPFRAPLIITVVAKCEENHKVPVWEQEMSAGCAVMAMQMAAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYL GTPQLKASTTISTPDPTPFVRYF
Specific function: Unknown
COG id: COG0778
COG function: function code C; Nitroreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitroreductase family [H]
Homologues:
Organism=Escherichia coli, GI1788063, Length=183, Percent_Identity=88.5245901639344, Blast_Score=341, Evalue=1e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000415 [H]
Pfam domain/function: PF00881 Nitroreductase [H]
EC number: NA
Molecular weight: Translated: 20128; Mature: 20128
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQPWRFFVIEGEGRDRFSA CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHH VLEQGAVAAGGDEKAIEKARNAPFRAPLIITVVAKCEENHKVPVWEQEMSAGCAVMAMQM HHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCCCCHHHHHCCHHHHHHHH AAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYLGTPQLKASTTISTPDPTPFV HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHEEEEEEECCCCCCCCEEECCCCCCCCC RYF CCC >Mature Secondary Structure MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQPWRFFVIEGEGRDRFSA CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHH VLEQGAVAAGGDEKAIEKARNAPFRAPLIITVVAKCEENHKVPVWEQEMSAGCAVMAMQM HHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCCCCHHHHHCCHHHHHHHH AAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYLGTPQLKASTTISTPDPTPFV HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHEEEEEEECCCCCCCCEEECCCCCCCCC RYF CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]