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The map label for this gene is ycgE [H]

Identifier: 29141613

GI number: 29141613

Start: 1215358

End: 1216206

Strand: Direct

Name: ycgE [H]

Synonym: t1144

Alternate gene names: 29141613

Gene position: 1215358-1216206 (Clockwise)

Preceding gene: 29141612

Following gene: 29141616

Centisome position: 25.36

GC content: 46.29

Gene sequence:

>849_bases
ATGGCTACTTTTAGTATTAGCGCAATGGCGGCGCAGTGTGGTGTCACAACAGCAAATATCAGGTCCTGGGAACGCTATGG
CCTGCTTCAACCTACCAAAGATGAAGCTGGCAATCGTTTTTATTGCATAGAAGATGCTATCAGAATACAGCATATTATCG
ACGCGTTAAGCAAAGGCTTCTCATTAAAAGAGATTAAACCTGCCCTCTATGGTGAAGAAACGCATTGCCGCTCGGGATGG
TTATTCTACCAGGAAGAGATTTTAGCGCAGTGTAGAAAATTCGAACCCGCCAAATTGCGAAAATTACTCTGGCGTTATGG
TCGGGAAATTCCGCCGTGTATCGTAATTGAGTCAATACTGCGTCCTTTATGGCTGTGGTTGTCCGCAGGCGATGATGATG
CACGCCGATTTGAAAAGGCATTACTGGATACTGCGATTATTGAATACGCCACGTTCCAGCTAAGTAGCGTACGAAAGGCG
CCAGCAGGCACAATGCTTATTGCTGCGTTTTCGCTGAACGACCCCATTGAGCTATGGCTGGAAACGATTAAATATTGTAG
TGAAGGTATGCGAGTTGAAGTCATCCCCTGGCAGGCGCCGATGCCCGATCTTTTATCAACGTCTTTCGAGCATATTGTTT
TGTGGCATGATGAGACATTAACTCCCGCCCAGGAAAATCTTATTCAGGCTTTAAAAGAATCGGGTAAATTTAGTCTTCAT
GTGAAAAATGGCTCAGGCTTAACATTACTGCCAGCCGTATACCGGCAGCATGAGATGCCCGAAAGCATGCAGCATGTTGC
ACCGCAAATCCATGCAAACGGCTACGAAAAATCAGGCACCGCACGTTGA

Upstream 100 bases:

>100_bases
TTTTCCGTGTAAATAGCAAGGTCATTGCTTAATAATGATTTGCTTCTGATGGCGTTTAGGTTCACTATGCTTTCTTACAT
CATCATGAGGCCAGACAGGC

Downstream 100 bases:

>100_bases
GGCATCTGCATTATTAACGAACAGGGGAGGAGTAACCCCCTCCCTTGTTTATACCCTTCATACTTCAAGTTGCTTATGTG
TTGGCTACGGATTACTCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGW
LFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLWLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR

Sequences:

>Translated_282_residues
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGW
LFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLWLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
>Mature_281_residues
ATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGWL
FYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLWLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAP
AGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLHV
KNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=238, Percent_Identity=31.0924369747899, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788448, Length=238, Percent_Identity=26.4705882352941, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32039; Mature: 31908

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGF
CCEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHCCCCEEEEHHHHHHHHHHHHHHHCCC
SLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESIL
CHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RPLWLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAPAGTMLIAAFSLNDPIELWL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
ETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
HHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
EECCCCCCHHHHHHHHHCCHHHHHHHCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
ATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGF
CEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHCCCCEEEEHHHHHHHHHHHHHHHCCC
SLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESIL
CHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RPLWLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAPAGTMLIAAFSLNDPIELWL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
ETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
HHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
EECCCCCCHHHHHHHHHCCHHHHHHHCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]