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The map label for this gene is appB [H]

Identifier: 29141557

GI number: 29141557

Start: 1166445

End: 1167581

Strand: Reverse

Name: appB [H]

Synonym: t1083

Alternate gene names: 29141557

Gene position: 1167581-1166445 (Counterclockwise)

Preceding gene: 29141558

Following gene: 29141556

Centisome position: 24.37

GC content: 55.32

Gene sequence:

>1137_bases
ATGTTGGATTATGAAACGTTGCGGTTCATTTGGTGGCTGCTGATCGGCGTCATCCTAGTGGCATTTATGGTAACTGACGG
GTTTGATATGGGTGTCGGTTGCCTGCTCCCGCTGATAGCGCGCAACGATGACGAACGCCGGGTATTGATCAATAGCGTCG
GCGCCCACTGGGAAGGAAACCAGGTATGGTTGATTCTCGCGGGCGGGGCATTATTCGCCGCCTGGCCACGGGTCTATGCC
GCCGCGTTTTCCGGTTTTTATGTGGCGATGATCCTGGTGCTGTGTGCCCTCTTCCTTCGCCCGCTGGCCTTTGATTATCG
GGGTAAAATCGCCAATGCCCGCTGGCGCGCGCTGTGGGATACCGGTCTGGTTATCGGCAGCCTGGTGCCCCCCGTTGTAT
TCGGCATCGCGTTCGGCAACCTGTTTTTAGGCGTGCCGTTTGCCTTCACGCCGCAGCTTCATGTTGACTATTTTGGCACC
TTCTGGCAGTTACTCTCGCCCTTTGCCCTACTGTGTGGATTATTGAGTCTGTCGTTGGTGATTATGCAAGGAGGCGTCTG
GTTACAGTTGAAAACGGAGGGCGTTATTCGTCAACGGGCTCTGTCGGCCACCCGCCACAGCGCGCTGCTGATCGTGATCT
GCTTCCTGCTGGCCGGTTACTGGCTGTGGGCCGGCGTTGATGGCTTTGTCTTACTCACGCAGGATGCCAACGGCCCTTCC
AATCCGCTCTTAAAAGGCGTGGCGATACTCCCTGGCGCATGGATGAACCACTTTATACGCTCGCCGCTACTGCTCATCAT
CCCGTTGCTCGGTATGATCCTGCCGATTCTGGCTTTCTATGCCTGCCTTCGCGGTCAGACTATTCGTGGATTTCTGTTCG
CTTCCCTGACCCAGGCCTGCGTCATCTTTACCGCCGGCATAACGCTATTTCCTTTTGTGATGCCGTCGAGTGTTAGTCCT
CTCTCCAGCCTGACGGTGTGGGACAGCACCTCCAGCCAGATGACGCTCGAAATCATGCTGGTGATTGTGCTGATTTTTCT
GCCAATCGTACTGCTCTATACGCTGTGGAGCTATTACAAAATGTTGGGGCGTATCAACCTGGAGACCCTCCGCCGCAACG
ATCATGAACTTTATTAG

Upstream 100 bases:

>100_bases
TAATCGCGGAAGTCTATCTGATGCAGAAGTACGCGCGTCTTGGGCCGAGCGCCATGCAACATCAACAACAAGCGCAACAA
CAGGGATAAAGGAGACAATC

Downstream 100 bases:

>100_bases
GGAGCGAGAGCGATGTGGTATTTACTGTGGTTTGTCGGCATTCTGCTGATGTGCTCACTGTCGACGCTGGTGCTGGTGTG
GCTTGAGTCGCGTCAACAAT

Product: cytochrome oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFLRPLAFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGT
FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSP
LSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY

Sequences:

>Translated_378_residues
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFLRPLAFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGT
FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSP
LSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY
>Mature_378_residues
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFLRPLAFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGT
FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSP
LSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=378, Percent_Identity=80.1587301587302, Blast_Score=614, Evalue=1e-177,
Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=55.4089709762533, Blast_Score=433, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42115; Mature: 42115

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCCCCCC
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFLRPLAFDYRGKIANARWRALWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC
CHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK
HHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGRINLETLRRNDHELY
HHHCCCHHHHHCCCCCCC
>Mature Secondary Structure
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCCCCCC
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFLRPLAFDYRGKIANARWRALWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC
CHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK
HHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGRINLETLRRNDHELY
HHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]