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The map label for this gene is cph2 [H]

Identifier: 29141489

GI number: 29141489

Start: 1094385

End: 1095515

Strand: Reverse

Name: cph2 [H]

Synonym: t1011

Alternate gene names: 29141489

Gene position: 1095515-1094385 (Counterclockwise)

Preceding gene: 29141491

Following gene: 29141488

Centisome position: 22.86

GC content: 49.87

Gene sequence:

>1131_bases
ATGGGGCAGGATTCGGACGACAGGCGCCGTACCTCCAGTGCTGGAAGGGTATGGCAGGATCATAAAGATATGGTCAGGCA
AGCGCTACGTGTAAGTATTCCGTGGTTCACATTTGTGAATATCAGCTTTGCGCTTATCATTTTATTTCGCCACATACTCA
TCAGTGACTTTGACAAGTCGATCAGTGCACAGACTGGAATACTGCCTTTAATAGACGATATTATGGGCAGTATTATTGTT
TTTTCGTTCCTGATACTCCTTTTCATTTACCGCCTTCCGGCCAGATTTACTCCTCTTTGTCTGGTGATGCTGCTGATTCT
CAGTCTGATGTGGAGCTATTGTAGCTACTGTTTTATTGTCTGGTGGCAACTGCCTTTTGCCTGGCCTCTCAGTGTCATCC
TTATGCTTACCGCGCTGGCTGCGCTTTATTATCATCTGCCAGCGTTGCTACTTTTCATCGTCCCGTTATGGCTGACCGCC
CTACTGGCCAGCGTGCAGCTTAACCAGTATGTGAATATCCGGTTTTTATTAGTCTGGCTTACTCTTACCGCCATACTCAT
TTATGGTCGCTTTATCCTGCAGCGCTGGTTTGATGAAGCCTGGTTGCGTTACCAGGAAAACCGGATGCTTATCGCGCGTC
TCGACGTTATGGCTCACCAGGATGCACTGACCGGGACCGCTAATCGACGTTCAATGGAAAGTTTTCTTGGGGATGCTCTC
CGCCAGACGGAGCCGTTTGCACTGATCATGCTCGATGTGGACTATTTCAAAAACTATAACGACAATTATGGTCACCAGGC
TGGCGATGCCTGTCTGGCAAAGGTGGCCTGTGTAGTAAAGAGGTCGATTCGTACTCCGGCAGACCTGGTGGCACGTTACG
GGGGCGAGGAGTTTGTCGTTGTGCTGCCTTCGTCGTCGCTGAATGAAGCTGCACTGGTTGCTAAACGTATTCAGACAAAC
CTGCGTGAAACCGCACTGCCGCATGTAGCATCTGCGGTAAGCGAAACGGTCACCGTCAGCATGGGCATCACCCTTTCCAC
AGCCGGTGACACTGTTACCGGCATTATTGCCAGAGCGGATGAGGCCCTTTATCGGGCTAAACAACAGGGACGTAATCGTT
GGGTAAAGTAA

Upstream 100 bases:

>100_bases
CCAAAAATGCAGCCTGGCCTGATAGCTTTTCCATTTTTCACCATGAAGTATCTCCGCACTACACTGGATAGTAATTATTC
ATTATATGAGGCGATTAAGG

Downstream 100 bases:

>100_bases
AACCAGTTGCCCGGTGTTTGATACAGAAGATCACCTTGCCATACTCAGATAATTAAAACTGAATATTTGGAAGCAAAAAA
GACAGTCGGACTCACGGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIV
FSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTA
LLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDAL
RQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTN
LRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK

Sequences:

>Translated_376_residues
MGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIV
FSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTA
LLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDAL
RQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTN
LRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK
>Mature_375_residues
GQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIVF
SFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTAL
LASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDALR
QTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNL
RETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=37.037037037037, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=209, Percent_Identity=35.4066985645933, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=34.8837209302326, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786584, Length=256, Percent_Identity=28.515625, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=36.9426751592357, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=34.5679012345679, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=34.7058823529412, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=34.3023255813954, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=32.1212121212121, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=34.1040462427746, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=33.1210191082803, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=34.4370860927152, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 42797; Mature: 42666

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKS
CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQYVNIRFLLVWL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVV
HCCCCEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEE
VLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARAD
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCCCHHHHHHHHHH
EALYRAKQQGRNRWVK
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKS
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQYVNIRFLLVWL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVV
HCCCCEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEE
VLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARAD
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEEEECCCCHHHHHHHHHH
EALYRAKQQGRNRWVK
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]