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The map label for this gene is yobA [H]

Identifier: 29141483

GI number: 29141483

Start: 1090922

End: 1091302

Strand: Direct

Name: yobA [H]

Synonym: t1002

Alternate gene names: 29141483

Gene position: 1090922-1091302 (Clockwise)

Preceding gene: 29141479

Following gene: 29141484

Centisome position: 22.77

GC content: 52.49

Gene sequence:

>381_bases
GTGAATATGGCTTCTTCTGCACCATCGCGACGTTTAGCTTTACTGCTGCTGGCATCGACATTTGCGACGCCAGCGGCCTG
GGCACATGCGCACCTGACGCATCAGTATCCAGCAGCGAATGCTGCCGTTACGGCCTCGCCACAGGCGCTGACTCTGAACT
TTTTTGAAGGGATTGAGCCAGGATTCAGCGGCGCAACCATTACTGGCCCTCAGCAAGAGTCCATCAAAACGCGCCCGGCA
AAGCGAAATGAACAGGATAAAACGCAGTTGATTATCCCGCTTGAGCAGCCGTTAAAATCTGGCGCTTACACGGTAGACTG
GCACGTTGTGTCGGTGGATGGACATAAAACAAAAGGGAAATACACCTTCAGCGTGAAATAA

Upstream 100 bases:

>100_bases
TACTAAGAGTCCGCGGCAATGGCAAGATGGAAATGATGATCCTCGACTCATTGATTGTTGAAGGTTATTCTTTGTAACGT
AGGTATAACAAAAAGGAATA

Downstream 100 bases:

>100_bases
ATGATGCTGACATTCGTCTGGATAACTCTCCGATTTATTCATTTTGCTAGTTTGATGCTGGTCTACGGCTGCGCGCTTTA
CGGCGCCTGGCTGGCACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MNMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEPGFSGATITGPQQESIKTRPA
KRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK

Sequences:

>Translated_126_residues
MNMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEPGFSGATITGPQQESIKTRPA
KRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
>Mature_126_residues
MNMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEPGFSGATITGPQQESIKTRPA
KRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK

Specific function: Unknown

COG id: COG2372

COG function: function code R; Uncharacterized protein, homolog of Cu resistance protein CopC

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopC family [H]

Homologues:

Organism=Escherichia coli, GI1788146, Length=124, Percent_Identity=73.3870967741936, Blast_Score=192, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC [H]

EC number: NA

Molecular weight: Translated: 13601; Mature: 13601

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEP
CCCCCCCCCHHHHHEEEHHHHCCCCHHHHEEEECCCCCCCEEEECCCCEEEEEECCCCCC
GFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGK
CCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCEEEEEEEEEECCCCCCCE
YTFSVK
EEEEEC
>Mature Secondary Structure
MNMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEP
CCCCCCCCCHHHHHEEEHHHHCCCCHHHHEEEECCCCCCCEEEECCCCEEEEEECCCCCC
GFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGK
CCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCEEEEEEEEEECCCCCCCE
YTFSVK
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Cu [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]