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The map label for this gene is fliF [H]

Identifier: 29141395

GI number: 29141395

Start: 1004661

End: 1006343

Strand: Reverse

Name: fliF [H]

Synonym: t0908

Alternate gene names: 29141395

Gene position: 1006343-1004661 (Counterclockwise)

Preceding gene: 29141397

Following gene: 29141394

Centisome position: 21.0

GC content: 56.86

Gene sequence:

>1683_bases
ATGAGTGCGACTGCATCGACTGCAACCCAACCTAAACCTCTCGAGTGGCTTAATCGCCTACGCGCGAATCCCCGAATTCC
GTTAATTGTGGCGGGTTCCGCCGCCGTGGCGATCGTCGTTGCGATGGTGCTGTGGGCCAAAACGCCCGATTACCGCACGC
TATTTAGCAACCTTTCCGATCAGGACGGCGGCGCGATCGTCGCGCAGTTGACCCAGATGAATATCCCCTATCGCTTTGCC
AATGGCAGCGGCGCGATTGAAGTGCCCGCCGACAAAGTGCATGAACTGCGTCTGCGTCTGGCGCAGCAGGGGCTGCCTAA
AGGCGGCGCGGTAGGCTTTGAACTGCTTGATCAGGAAAAATTCGGTATCAGTCAGTTCAGCGAGCAGGTGAATTATCAGC
GCGCGCTGGAAGGTGAACTGGCCCGGACGATCGAGACGCTGGGTCCGGTAAAAAGCGCCCGCGTTCACCTGGCGATGCCA
AAGCCGTCGCTATTTGTGCGGGAACAAAAATCCCCTTCCGCCTCCGTCACCGTCACACTGGAACCGGGCCGGGCGCTGGA
TGAAGGACAAATTAGCGCCGTGGTACATCTGGTTTCCAGCGCTGTCGCCGGTTTGCCGCCAGGAAACGTCACTCTGGTCG
ATCAATCCGGTCATCTGCTCACGCAATCCAATACCAGCGGTCGCGACCTTAATGACGCGCAATTAAAATTTGCTAATGAT
GTGGAAAGCCGCATCCAACGCCGTATCGAAGCCATTCTGTCGCCTATCGTCGGGAACGGTAATGTTCACGCTCAGGTAAC
CGCCCAGTTGGATTTTGCCAATAAAGAACAGACGGAAGAGCACTACAGCCCGAACGGCGATGCGTCGAAGGCCACTCTGC
GTTCACGTCAGTTGAATATTAGCGAACAGGTAGGCGCGGGCTATCCCGGCGGCGTGCCTGGCGCGCTGTCGAACCAACCA
GCGCCGCCTAACGAGGCGCCGATCGCCACACCGCCGACCAATCAACAAAACGCGCAGAATACGCCACAAACCAGCACCAG
TACCAACAGTAACAACGCTGGCCCGCGCAATACGCAGCGTAATGAAACCAGTAACTACGAAGTGGACCGCACCATTCGTC
ACACCAAAATGAATGTGGGCGATATTGAGCGTCTCTCTGTAGCTGTCGTGGTGAATTACAAAACGCTGGCGGATGGCAAA
CCGCTGCCATTGACCGCCGATCAGATGAAACAGATCGAGGATTTAACCCGTGAAGCGATGGGTTTTTCTGATAAACGCGG
CGATACGCTAAACGTGGTGAATTCACCGTTTAGCGCAGTGGATAACACCGGCGGCGAACTGCCCTTCTGGCAACAGCAGT
CCTTTATCGATCAGTTGCTCGCGGCAGGTCGCTGGTTACTGGTGCTGGTGGTGGCCTGGATTCTGTGGCGCAAAGCGGTA
CATCCACAGTTGACGCGCCGCGTTGAAGAAGCGAAAGCGGCGCAGGAACAGGCGCAGGTTCGCCAGGAAACCGAAGAAGC
CGTGGAAGTACGCCTTAGCAAAGACGAGCAGCTCCAGCAACGCCGGGCTAACCAGCGTCTGGGCGCTGAGGTGATGAGCC
AGCGTATTCGCGAAATGTCAGACAACGATCCGCGCGTGGTGGCGCTGGTCATTCGCCAGTGGATGAGTAACGATCATGAG
TAA

Upstream 100 bases:

>100_bases
CAAATAATGAGACCGTCAATTTTTCGAGTTTGCTGACCCGGGAGTGAGTCTTGTTCCACTTTGCAAAAAACGCCGTCCAC
GATCAGTCACGAGGTGCGAG

Downstream 100 bases:

>100_bases
TCTTAGCGGTACCGATAAAAGCGTCATTTTGTTGATGACCATTGGCGAAGACCGGGCGGCAGAGGTGTTTAAACACCTCT
CCACCCGCGAAGTACAGGCG

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MSATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFA
NGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMP
KPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAND
VESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQP
APPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK
PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAV
HPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE

Sequences:

>Translated_560_residues
MSATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFA
NGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMP
KPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAND
VESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQP
APPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK
PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAV
HPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE
>Mature_559_residues
SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFAN
GSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK
PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV
ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPA
PPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP
LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVH
PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=555, Percent_Identity=85.945945945946, Blast_Score=952, Evalue=0.0,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 61266; Mature: 61134

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSD
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHCCCC
QDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEK
CCCCCEEHHHHHCCCCEEECCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHH
FGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCEEEEEE
EPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAND
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHH
VESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNI
HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC
SEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQR
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAM
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
GFSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAV
CCCCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
HPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
DNDPRVVALVIRQWMSNDHE
CCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSD
CCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHCCCC
QDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEK
CCCCCEEHHHHHCCCCEEECCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHH
FGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCEEEEEE
EPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAND
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHH
VESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNI
HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC
SEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQR
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAM
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
GFSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAV
CCCCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
HPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
DNDPRVVALVIRQWMSNDHE
CCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2544561; 11677609; 1551848 [H]