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The map label for this gene is ompS

Identifier: 29141371

GI number: 29141371

Start: 984125

End: 985309

Strand: Reverse

Name: ompS

Synonym: t0883

Alternate gene names: 29141371

Gene position: 985309-984125 (Counterclockwise)

Preceding gene: 29141376

Following gene: 29141366

Centisome position: 20.56

GC content: 50.55

Gene sequence:

>1185_bases
ATGAACAGAAAAGTTCTGGCACTGCTTGTCCCGGCGTTATTAGTGGCAGGCGCAGCAAATGCGGCTGAAATTTATAATAA
AAATGGCAACAAACTCGACCTGTACGGCAAAGTTGATGGTCTGCGTTACTTCTCTGACAATGCAGGCGACGATGGCGATC
AGTCCTACGCCCGTATTGGCTTTAAAGGCGAAACGCAGATCAACGATATGCTGACCGGCTATGGTCAGTGGGAATACAAC
ATTAAGGTGAACACCACCGAAGGCGAAGGTGCAAACTCCTGGACTCGTCTGGGCTTTGCCGGTCTGAAATTCGGCGAGTA
CGGCTCTTTCGATTATGGCCGTAACTATGGTGTTATCTACGACATTGAAGCCTGGACCGATGCGCTGCCGGAATTCGGCG
GTGATACTTATACCCAGACCGATGTCTATATGCTGGGCAGAACCAACGGCGTTGCCACCTACCGTAATACCGACTTCTTC
GGTCTGGTGGAAGGCCTGAACTTCGCGTTGCAGTACCAGGGTAATAATGAAAACGGCGGTGCTGGTGCTGGTGAAGGTAC
AGGTAACGGCGGCAACCGCAAACTGGCCCGTGAAAACGGCGACGGTTTCGGTATGTCTACCTCCTACGACTTTGACTTCG
GGTTAAGCCTGGGTGCGGCCTACTCTTCCTCTGACCGTTCGGACAATCAGGTTGCTCGTGGTTATGGCGACGGCATGAAT
GAGCGCAACAACTATGCCGGCGGTGAAACCGCTGAAGCCTGGACCATAGGTGCCAAATATGACGCCTACAATGTTTACCT
GGCGGCCATGTACGCTGAAACCCGCAACATGACCTATTATGGCGGCGGCAATGGCGAAGGTAATGGCAGTATTGCTAACA
AAACCCAGAACTTTGAAGTGGTTGCGCAGTACCAGTTCGATTTCGGTCTGCGTCCGTCCATCGCCTACTTGCAGTCTAAG
GGCAAAGATTTAGGCGGTCAGGAAGTCCATCGTGGCAACTGGCGTTACACCGACAAAGATCTGGTTAAATATGTTGACGT
CGGTATGACTTACTACTTCAACAAAAATATGTCCACCTACGTTGATTATAAAATCAACCTGCTGGACGAAGATGATGACT
TCTACGCAAACAACGGTATTGCAACCGATGATATCGTAGGTGTTGGTCTGGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TATTTTTTAAATTCCATGAACTTCATAGAATAGTATCAATTTGTAGTTTTGTTGAAGTGGCTACATATTCATATAAATTA
TTATCATAAGGGAATACATA

Downstream 100 bases:

>100_bases
GACGCTTTATGTTATTCAAGCCCGTGCTTAGCGCGGGCTTGTTATTATAGGGCAAGAATTAAATAACGGATAACGGCGCA
AAGACAGGTGACCAGGCTTC

Product: outer membrane protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNENGGAGAGEGTGNGGNRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRSDNQVARGYGDGMN
ERNNYAGGETAEAWTIGAKYDAYNVYLAAMYAETRNMTYYGGGNGEGNGSIANKTQNFEVVAQYQFDFGLRPSIAYLQSK
GKDLGGQEVHRGNWRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF

Sequences:

>Translated_394_residues
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNENGGAGAGEGTGNGGNRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRSDNQVARGYGDGMN
ERNNYAGGETAEAWTIGAKYDAYNVYLAAMYAETRNMTYYGGGNGEGNGSIANKTQNFEVVAQYQFDFGLRPSIAYLQSK
GKDLGGQEVHRGNWRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
>Mature_394_residues
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNENGGAGAGEGTGNGGNRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRSDNQVARGYGDGMN
ERNNYAGGETAEAWTIGAKYDAYNVYLAAMYAETRNMTYYGGGNGEGNGSIANKTQNFEVVAQYQFDFGLRPSIAYLQSK
GKDLGGQEVHRGNWRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family

Homologues:

Organism=Escherichia coli, GI1787641, Length=375, Percent_Identity=68.2666666666667, Blast_Score=493, Evalue=1e-141,
Organism=Escherichia coli, GI1788544, Length=395, Percent_Identity=63.5443037974684, Blast_Score=441, Evalue=1e-125,
Organism=Escherichia coli, GI1786436, Length=397, Percent_Identity=54.911838790932, Blast_Score=404, Evalue=1e-114,
Organism=Escherichia coli, GI1787160, Length=401, Percent_Identity=54.6134663341646, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMPS1_SALTI (Q56110)

Other databases:

- EMBL:   X73237
- EMBL:   AL627272
- EMBL:   AE014613
- PIR:   S34263
- RefSeq:   NP_456554.1
- RefSeq:   NP_804713.1
- ProteinModelPortal:   Q56110
- SMR:   Q56110
- GeneID:   1070164
- GeneID:   1248543
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t0883
- KEGG:   sty:STY2203
- HOGENOM:   HBG673855
- OMA:   RTDNQVA
- ProtClustDB:   CLSK894239
- BioCyc:   SENT209261:T0883-MONOMER
- BioCyc:   SENT220341:STY2203-MONOMER
- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10
- PRINTS:   PR00183
- PRINTS:   PR00182

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 43254; Mature: 43254

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCEEEEC
FKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIY
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFFGLVEGLNFALQYQGNNENGG
ECHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCCHHEEECCCCEEEEECCCCCCCC
AGAGEGTGNGGNRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRSDNQVARGYGDGMN
CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCC
ERNNYAGGETAEAWTIGAKYDAYNVYLAAMYAETRNMTYYGGGNGEGNGSIANKTQNFEV
CCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHCCEEEEECCCCCCCCCCCCCCCCEEE
VAQYQFDFGLRPSIAYLQSKGKDLGGQEVHRGNWRYTDKDLVKYVDVGMTYYFNKNMSTY
EEEEEECCCCCCHHHHHHHCCCCCCCCCEECCCCEECHHHHHHHHHCCEEEEECCCCCEE
VDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
EEEEEEEECCCCCEEECCCCCCHHEEEEEEEEEC
>Mature Secondary Structure
MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARIG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCEEEEC
FKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIY
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFFGLVEGLNFALQYQGNNENGG
ECHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCCHHEEECCCCEEEEECCCCCCCC
AGAGEGTGNGGNRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRSDNQVARGYGDGMN
CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCC
ERNNYAGGETAEAWTIGAKYDAYNVYLAAMYAETRNMTYYGGGNGEGNGSIANKTQNFEV
CCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHCCEEEEECCCCCCCCCCCCCCCCEEE
VAQYQFDFGLRPSIAYLQSKGKDLGGQEVHRGNWRYTDKDLVKYVDVGMTYYFNKNMSTY
EEEEEECCCCCCHHHHHHHCCCCCCCCCEECCCCEECHHHHHHHHHCCEEEEECCCCCEE
VDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
EEEEEEEECCCCCEEECCCCCCHHEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7789812; 11677608; 12644504