Click here to switch to the map view.

The map label for this gene is pduB [H]

Identifier: 29141332

GI number: 29141332

Start: 929412

End: 930113

Strand: Reverse

Name: pduB [H]

Synonym: t0835

Alternate gene names: 29141332

Gene position: 930113-929412 (Counterclockwise)

Preceding gene: 29141333

Following gene: 29141331

Centisome position: 19.41

GC content: 60.97

Gene sequence:

>702_bases
ATGGCAGAAAAAAGCTGCAGTTTAACGGAATTTGTCGGGACCGCCATTGGCGATACCCTTGGCCTGGTTATCGCCAACGT
CGATACCGCCCTGCTGGACGCGATGAAACTTGAGAAGCGCTATCGTTCCATCGGCATTCTCGGCGCCCGCACCGGCGCAG
GCCCGCACATTATGGCGGCGGACGAAGCGGTGAAAGCCACCAACACCGAAGTGGTCAGCATTGAGCTGCCGCGCGATACC
AAAGGCGGCGCGGGCCACGGTTCGCTGATTATTTTAGGCGGTAACGACGTTTCCGACGTCAAGCGCGGTATCGAAGTCGC
GCTGAAAGAGCTGGACCGCACCTTCGGCGATGTTTACGGCAACGAAGCCGGGCATATCGAGCTGCAGTACACCGCTCGCG
CCAGCTACGCCCTGGAAAAAGCGTTCGGCGCGCCGATTGGCCGTGCCTGCGGCGTCATCGTCGGCGCTCCGGCTTCCGTT
GGCGTACTGATGGCCGATACCGCCCTGAAGTCAGCCAACGTTGAAGTCGTGGCGTACAGCTCTCCGGCGCACGGCACCAG
CTTTAGTAACGAAGCCATTCTGGTGATTTCCGGCGACTCCGGCGCGGTCCGTCAGGCGGTGACCTCCGCCCGCGAAATCG
GCAAAACCGTCCTTGCGACCCTCGGTTCTGAACCGAAAAACGATCGCCCGTCCTACATCTGA

Upstream 100 bases:

>100_bases
TGAGCTGGTGGAACAGATCATGGCGCAGGTGATTGCCCGTGTGGCAACGCCGGAACAACAGGCCATCCCTGGTCAACCCC
AACCTATACGAGAGACGGCT

Downstream 100 bases:

>100_bases
TACCCACGAGGCTGATTCATGAGATCGAAAAGATTTGAAGCACTGGCGAAACGCCCTGTGAATCAGGACGGCTTCGTTAA
GGAGTGGATCGAAGAAGGCT

Product: propanediol utilization protein PduB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MAEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVKATNTEVVSIELPRDT
KGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYGNEAGHIELQYTARASYALEKAFGAPIGRACGVIVGAPASV
GVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI

Sequences:

>Translated_233_residues
MAEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVKATNTEVVSIELPRDT
KGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYGNEAGHIELQYTARASYALEKAFGAPIGRACGVIVGAPASV
GVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI
>Mature_232_residues
AEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVKATNTEVVSIELPRDTK
GGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYGNEAGHIELQYTARASYALEKAFGAPIGRACGVIVGAPASVG
VLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4816

COG function: function code E; Ethanolamine utilization protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EutL/PduB family [H]

Homologues:

Organism=Escherichia coli, GI1788780, Length=178, Percent_Identity=29.7752808988764, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009193
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 23987; Mature: 23856

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEC
DEAVKATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYG
CCHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
NEAGHIELQYTARASYALEKAFGAPIGRACGVIVGAPASVGVLMADTALKSANVEVVAYS
CCCCEEEEEEECCHHHHHHHHHCCCCHHHCCEEEECCCCCCEEEEHHHHCCCCEEEEEEC
SPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEC
DEAVKATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYG
CCHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
NEAGHIELQYTARASYALEKAFGAPIGRACGVIVGAPASVGVLMADTALKSANVEVVAYS
CCCCEEEEEEECCHHHHHHHHHCCCCHHHCCEEEECCCCCCEEEEHHHHCCCCEEEEEEC
SPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609 [H]