Click here to switch to the map view.

The map label for this gene is yfcH [H]

Identifier: 29141029

GI number: 29141029

Start: 587613

End: 588506

Strand: Reverse

Name: yfcH [H]

Synonym: t0514

Alternate gene names: 29141029

Gene position: 588506-587613 (Counterclockwise)

Preceding gene: 29141030

Following gene: 29141018

Centisome position: 12.28

GC content: 57.72

Gene sequence:

>894_bases
ATGCAGATTCTGATTACCGGCGGTACGGGCCTGATAGGGCGTCATCTCATTCCCCGGCTGTTAATACTGGGGCACCAGGT
GACGGTCGTTACGCGCAATCCCGATAACGCGCGTCAGATTCTCGATTCCAGAGTGACATTATGGAAAGGGCTGGCGGAAC
GTGAGCACCTCAATGAGATTGATGCCATCATCAATCTGGCGGGCGAACCGATTGCCGACAAGCGCTGGACGTCGCAACAA
AAAGAACGGTTGTGCCAAAGCCGCTGGGCTATCACGCAAAAGTTGGTGGATTTAATTCATGCCAGCGCTACGCCGCCCTC
GGTGTTGATATCCGGCTCCGCCACGGGCTATTACGGCGATCTGGGCGACGTTGTCGTCACTGAAGATGAGCCGCCGCACA
ACGAATTTACGCATAAACTTTGCGCCCGCTGGGAACAGATTGCCTGTCGTGCGCAGAGCGACCAGACCCGCGTCTGCCTG
CTGCGTACCGGCGTTGTCCTGGCGCCGCAAGGCGGGATTCTGGGGAAAATGGTTCCGCCGTTTCGCCTCGGACTCGGCGG
TCCGGTGGGTAATGGTCGGCAATATCTGGCCTGGATTCACATTGACGATATGGTCAACGGCATCCTGTGGCTGCTGGATA
ACGATCTTCGCGGTCCCTTCAATATGGTCTCGCCGTATCCCGTCCATAATGAGCAGTTTGCTCATGCGCTGGGTCGCGCG
CTGCGCCGCCCGGCGATTATTCGCATTCCGGCGACGGCAATTCGCTTATTGATGGGAGAGTCGTCAGTGCTGGTACTGGG
CGGACAGCGGGCGCTGCCAAAACGGCTTGAAGCCGCCGGATTCGCATTTCGCTGGTATGATTTAGAAGAGGCGCTGGCGG
ATGTGATTCGCTAA

Upstream 100 bases:

>100_bases
ATGTAGAGGTGTATACACGGAAAACCTGCGTCCGGCACCCTTATTCGTATTAAAAACCTGACATTAGGGAAGAGGAAATC
CTCCCTACTCTGGAGGTCAT

Downstream 100 bases:

>100_bases
TTCCCAAAGCGCCGTATCCTGCCCGGTAAGCGATGCGCCGCCGGGCTTCTTTTATTTCAGCGAGCCTTTCAGGAATTGCT
GTAAACGCGGGCTTTGCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MQILITGGTGLIGRHLIPRLLILGHQVTVVTRNPDNARQILDSRVTLWKGLAEREHLNEIDAIINLAGEPIADKRWTSQQ
KERLCQSRWAITQKLVDLIHASATPPSVLISGSATGYYGDLGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCL
LRTGVVLAPQGGILGKMVPPFRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVHNEQFAHALGRA
LRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRLEAAGFAFRWYDLEEALADVIR

Sequences:

>Translated_297_residues
MQILITGGTGLIGRHLIPRLLILGHQVTVVTRNPDNARQILDSRVTLWKGLAEREHLNEIDAIINLAGEPIADKRWTSQQ
KERLCQSRWAITQKLVDLIHASATPPSVLISGSATGYYGDLGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCL
LRTGVVLAPQGGILGKMVPPFRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVHNEQFAHALGRA
LRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRLEAAGFAFRWYDLEEALADVIR
>Mature_297_residues
MQILITGGTGLIGRHLIPRLLILGHQVTVVTRNPDNARQILDSRVTLWKGLAEREHLNEIDAIINLAGEPIADKRWTSQQ
KERLCQSRWAITQKLVDLIHASATPPSVLISGSATGYYGDLGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCL
LRTGVVLAPQGGILGKMVPPFRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVHNEQFAHALGRA
LRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRLEAAGFAFRWYDLEEALADVIR

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=301, Percent_Identity=35.8803986710963, Blast_Score=176, Evalue=2e-44,
Organism=Escherichia coli, GI1788642, Length=297, Percent_Identity=86.5319865319865, Blast_Score=536, Evalue=1e-154,
Organism=Drosophila melanogaster, GI28573846, Length=295, Percent_Identity=29.8305084745763, Blast_Score=158, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 32893; Mature: 32893

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQILITGGTGLIGRHLIPRLLILGHQVTVVTRNPDNARQILDSRVTLWKGLAEREHLNEI
CEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DAIINLAGEPIADKRWTSQQKERLCQSRWAITQKLVDLIHASATPPSVLISGSATGYYGD
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
LGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCLLRTGVVLAPQGGILGKMVPP
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCCCCCCCC
FRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVHNEQFAHALGRA
CCCCCCCCCCCCCEEEEEEEHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
LRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRLEAAGFAFRWYDLEEALADVIR
HCCCEEEEECHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCEEEEECHHHHHHHHHC
>Mature Secondary Structure
MQILITGGTGLIGRHLIPRLLILGHQVTVVTRNPDNARQILDSRVTLWKGLAEREHLNEI
CEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DAIINLAGEPIADKRWTSQQKERLCQSRWAITQKLVDLIHASATPPSVLISGSATGYYGD
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
LGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCLLRTGVVLAPQGGILGKMVPP
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCCCCCCCC
FRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVHNEQFAHALGRA
CCCCCCCCCCCCCEEEEEEEHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
LRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRLEAAGFAFRWYDLEEALADVIR
HCCCEEEEECHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCEEEEECHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]