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The map label for this gene is ratC

Identifier: 29140873

GI number: 29140873

Start: 405324

End: 406904

Strand: Direct

Name: ratC

Synonym: t0343

Alternate gene names: NA

Gene position: 405324-406904 (Clockwise)

Preceding gene: 29140872

Following gene: 29140875

Centisome position: 8.46

GC content: 55.41

Gene sequence:

>1581_bases
GTGCCCATTCGGCTGGGGCGAGGAAACTATTCGCAAAACCGGGCTGGCGGTAGTGACAGCACCAACAACAGCGACATGCT
GTTAACGCCGATTGCGCCGCCAGCGGATGCTAAAGTATTTGCCTACCATTATTCCGGGGAGCAGCTCTGGTACTGGTACG
GCACTACGGATGAGAGCGGCAGGGTGCAGTTTGAGCTGACGCAGGATAATACCCCCGGCCTGAAAACAGCGCTGCAGGCG
ATGCTGTCCGACAATCCGCCGACCGTCAGCAATATGGATGTCATTTTTACCGTCATTACCAGCCCGGACAGCGATAAAGC
CAAAATGTGGGGCCATATGCCGGAAACGGCGGCCAACAGCGCGGGGGTGAAATTCCACCGCCCGCTGCTGGCTGCGGAGA
TGACGTCGAATAGCGGCACCTACTATTACAATAACGAAACATGGCCTCTGGTGACTATCGCGAACACCCAGAAAGCGGGC
GCGACCACCTGTGATGCTGCATATCAGCCGTTGTTTAATGACCTGCAAACGCTGTATAGCGACCATCCAGACAGCGCTCT
CAATACGGCATTCGGCTGGCCGGTAGGGGCGGGTAAAAGCTGGCTGGCGGTGGACCAGGAGCCTGGAACCGGGTATTACC
AGTATCTGCGGCTGGATACCGGCGCCAAAGGCCACACCAGTTCCACGAGCGTGTCTGGCGCGCAGGTGTGTCTGGTCGAG
CCGCATACGTCTACTCCTGCCAATATTACGCTGACCTCGACGGCGATGGACAGCGCGAAAAACGCGGCGGTAGTGGAGAA
GGGAAGCGCGATGCCGTTAACGGTGACGGTAAAAGATAGCAGCGGTAACCCGGTCGCCAACGTCGGTTTTACGTTGTCAC
GTGGCGATTCGAAAAATCGGGCAGGTACGGTGGTAACGGATGGCGACGTGGCAGCGGATGCCGGAGCAGATGATCTCATG
CTTAAAGAGCTGACTCCCGCAAGCGCCAGCCGAAGTATGACCACCACCGGGATTGTCTTTACCGGCACTACCGGCAGCGA
CGGTACGGCAACGTTTACGCTTAATCAGGATAAAAGTCTGGGGTTAAAAACGCCACTCACGGTGAAACTGACGGACAATA
CGGCTCTTCACGCCTCACTGGATGTGATTTTTATGGTACTTACCAGCCCGGATACGGATAAAGCGTTGTTCTGGGGAAAT
ATGTCGGATACGACATCCGTCAACGGAAAAACGCTGCATCGTCCGTGGCTGCAGGCTGAGCTACCGTCAGGCGTGACGCC
AGTATTTACCAACGGAGTTCATGCAAATAACGAGTACTGGGCGATGACGCATACGGTGGACAACACTAAATGGGATATTG
CTAAACAGTGCGGTAGCCTGAGCAAAGCACCGGATAATAACGACCTGTTGACGCTGTATCATTCAATTAGCTCGTTAGGC
TGGCCGACGCTGGGCTATCCCTATTTATCTAAATCAACCTCGGGCGGCGGCATGTATTGCGGCGTGGATGAGAATACTAA
GCAGCAAAACTGCGCCATTCAGCCGGCAAGTACAGCAGGTTATGCGACGTGCGTGGAGTAA

Upstream 100 bases:

>100_bases
CGCCATGAATGCCGAAAAATCCGCCGCGCTGGCGAAAAAAGGGGATAAAATCCCGCTGACGGTGACCGTCACGGACGGCG
CCGGCACGCCGTAGCCCAAT

Downstream 100 bases:

>100_bases
CGTATTAAGCGTCTGGCACGAAAAATAATTTGTTTTTCACGTTCAATTGAGCTTCATGAAAAAGTGATCGGAGCATTCAT
TGAAAAGTATATGTTCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Protein; Ig-Like Domain Protein; RatA-Like Protein

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MPIRLGRGNYSQNRAGGSDSTNNSDMLLTPIAPPADAKVFAYHYSGEQLWYWYGTTDESGRVQFELTQDNTPGLKTALQA
MLSDNPPTVSNMDVIFTVITSPDSDKAKMWGHMPETAANSAGVKFHRPLLAAEMTSNSGTYYYNNETWPLVTIANTQKAG
ATTCDAAYQPLFNDLQTLYSDHPDSALNTAFGWPVGAGKSWLAVDQEPGTGYYQYLRLDTGAKGHTSSTSVSGAQVCLVE
PHTSTPANITLTSTAMDSAKNAAVVEKGSAMPLTVTVKDSSGNPVANVGFTLSRGDSKNRAGTVVTDGDVAADAGADDLM
LKELTPASASRSMTTTGIVFTGTTGSDGTATFTLNQDKSLGLKTPLTVKLTDNTALHASLDVIFMVLTSPDTDKALFWGN
MSDTTSVNGKTLHRPWLQAELPSGVTPVFTNGVHANNEYWAMTHTVDNTKWDIAKQCGSLSKAPDNNDLLTLYHSISSLG
WPTLGYPYLSKSTSGGGMYCGVDENTKQQNCAIQPASTAGYATCVE

Sequences:

>Translated_526_residues
MPIRLGRGNYSQNRAGGSDSTNNSDMLLTPIAPPADAKVFAYHYSGEQLWYWYGTTDESGRVQFELTQDNTPGLKTALQA
MLSDNPPTVSNMDVIFTVITSPDSDKAKMWGHMPETAANSAGVKFHRPLLAAEMTSNSGTYYYNNETWPLVTIANTQKAG
ATTCDAAYQPLFNDLQTLYSDHPDSALNTAFGWPVGAGKSWLAVDQEPGTGYYQYLRLDTGAKGHTSSTSVSGAQVCLVE
PHTSTPANITLTSTAMDSAKNAAVVEKGSAMPLTVTVKDSSGNPVANVGFTLSRGDSKNRAGTVVTDGDVAADAGADDLM
LKELTPASASRSMTTTGIVFTGTTGSDGTATFTLNQDKSLGLKTPLTVKLTDNTALHASLDVIFMVLTSPDTDKALFWGN
MSDTTSVNGKTLHRPWLQAELPSGVTPVFTNGVHANNEYWAMTHTVDNTKWDIAKQCGSLSKAPDNNDLLTLYHSISSLG
WPTLGYPYLSKSTSGGGMYCGVDENTKQQNCAIQPASTAGYATCVE
>Mature_525_residues
PIRLGRGNYSQNRAGGSDSTNNSDMLLTPIAPPADAKVFAYHYSGEQLWYWYGTTDESGRVQFELTQDNTPGLKTALQAM
LSDNPPTVSNMDVIFTVITSPDSDKAKMWGHMPETAANSAGVKFHRPLLAAEMTSNSGTYYYNNETWPLVTIANTQKAGA
TTCDAAYQPLFNDLQTLYSDHPDSALNTAFGWPVGAGKSWLAVDQEPGTGYYQYLRLDTGAKGHTSSTSVSGAQVCLVEP
HTSTPANITLTSTAMDSAKNAAVVEKGSAMPLTVTVKDSSGNPVANVGFTLSRGDSKNRAGTVVTDGDVAADAGADDLML
KELTPASASRSMTTTGIVFTGTTGSDGTATFTLNQDKSLGLKTPLTVKLTDNTALHASLDVIFMVLTSPDTDKALFWGNM
SDTTSVNGKTLHRPWLQAELPSGVTPVFTNGVHANNEYWAMTHTVDNTKWDIAKQCGSLSKAPDNNDLLTLYHSISSLGW
PTLGYPYLSKSTSGGGMYCGVDENTKQQNCAIQPASTAGYATCVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56001; Mature: 55869

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRLGRGNYSQNRAGGSDSTNNSDMLLTPIAPPADAKVFAYHYSGEQLWYWYGTTDESG
CCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCC
RVQFELTQDNTPGLKTALQAMLSDNPPTVSNMDVIFTVITSPDSDKAKMWGHMPETAANS
EEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCC
AGVKFHRPLLAAEMTSNSGTYYYNNETWPLVTIANTQKAGATTCDAAYQPLFNDLQTLYS
CCCEEECCEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
DHPDSALNTAFGWPVGAGKSWLAVDQEPGTGYYQYLRLDTGAKGHTSSTSVSGAQVCLVE
CCCCHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEC
PHTSTPANITLTSTAMDSAKNAAVVEKGSAMPLTVTVKDSSGNPVANVGFTLSRGDSKNR
CCCCCCCEEEEEEHHHCCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCC
AGTVVTDGDVAADAGADDLMLKELTPASASRSMTTTGIVFTGTTGSDGTATFTLNQDKSL
CEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCC
GLKTPLTVKLTDNTALHASLDVIFMVLTSPDTDKALFWGNMSDTTSVNGKTLHRPWLQAE
CCCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCEEECCCCEEC
LPSGVTPVFTNGVHANNEYWAMTHTVDNTKWDIAKQCGSLSKAPDNNDLLTLYHSISSLG
CCCCCCCEEECCEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHCC
WPTLGYPYLSKSTSGGGMYCGVDENTKQQNCAIQPASTAGYATCVE
CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCEEEECC
>Mature Secondary Structure 
PIRLGRGNYSQNRAGGSDSTNNSDMLLTPIAPPADAKVFAYHYSGEQLWYWYGTTDESG
CEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCC
RVQFELTQDNTPGLKTALQAMLSDNPPTVSNMDVIFTVITSPDSDKAKMWGHMPETAANS
EEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCC
AGVKFHRPLLAAEMTSNSGTYYYNNETWPLVTIANTQKAGATTCDAAYQPLFNDLQTLYS
CCCEEECCEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
DHPDSALNTAFGWPVGAGKSWLAVDQEPGTGYYQYLRLDTGAKGHTSSTSVSGAQVCLVE
CCCCHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEC
PHTSTPANITLTSTAMDSAKNAAVVEKGSAMPLTVTVKDSSGNPVANVGFTLSRGDSKNR
CCCCCCCEEEEEEHHHCCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCC
AGTVVTDGDVAADAGADDLMLKELTPASASRSMTTTGIVFTGTTGSDGTATFTLNQDKSL
CEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCC
GLKTPLTVKLTDNTALHASLDVIFMVLTSPDTDKALFWGNMSDTTSVNGKTLHRPWLQAE
CCCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCEEECCCCEEC
LPSGVTPVFTNGVHANNEYWAMTHTVDNTKWDIAKQCGSLSKAPDNNDLLTLYHSISSLG
CCCCCCCEEECCEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHCC
WPTLGYPYLSKSTSGGGMYCGVDENTKQQNCAIQPASTAGYATCVE
CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA