| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is pbpC [H]
Identifier: 29140858
GI number: 29140858
Start: 372866
End: 375181
Strand: Direct
Name: pbpC [H]
Synonym: t0325
Alternate gene names: 29140858
Gene position: 372866-375181 (Clockwise)
Preceding gene: 29140857
Following gene: 29140859
Centisome position: 7.78
GC content: 61.05
Gene sequence:
>2316_bases ATGAACGGTTGGCGTGGTAAACGTGGCCGCTGGCTGTGGCTGGCGGGCGCGCCGCTTTTTATTTTCCTGGCGTTATGGGC AGCGGATAAACTCTGGCCGCTGCCGCTCAATGAGGTCCATCCTGCGCGGGTCGTGGTCGCCCATGACGGTACGCCGCTGT GGCGCTTTGCCGACGCCGGGGGGATCTGGCGTTATCCGGTGACGATTGAAGAGGTCTCTCCCCGTTACCTGGAGGCCTTA ATCAATTACGAAGATCGCTGGTTCTGGCAGCACCCTGGCGTTAACCCTTTTTCCGTCGCGCGCGCGGCATGGCAGGATCT TACCGCCGGGCGCGTTATTTCCGGCGGCAGTACGCTGACTATGCAGGTGGCGAGACTTCTGGACCCGCATTCGCGCACGT TCGGCGGTAAAATCCGCCAGCTTTGGCGCGCCCTCCAGCTTGAATGGCATTTGTCCAAGCGCGATATCCTGACGTTGTAC CTGAACCGCGCGCCGTTCGGCGGCACGCTACAGGGTATTGGCGCTGCAAGCTGGGCCTACTTCGGCAAGCCGCCCGCGCG CCTGAGCTACGCTGACGCGGCGCTGCTGGCCGTATTGCCGCAGGCGCCGAGCCGGTTACGCCCCGACCGATGGCCTACGA GAGCCGAAGCGGCACGGAATAAAGTGCTGGATCGGATGGCGGAGCAGGGCGTCTGGCCTGCCGAAACGGTACGCGAGTCG CGTGAAGAGCCGGTCTGGCTGGCGCCGCGTCAAATGCCGCAACTGGCGCCGCTTTTTGCCCGAATGATGTTGAGTAAAAG CCGGAGCGACAAAATTGTGACCACGCTGGACGCCGGGTTGCAGCGGCAACTGGAAGATCTGGCGCGGGCATGGAAAGGGC GGCTGCCTGCACGCAGTTCATTGGCGATGATCGTCGTCGATCATACCGATATGAGCGTGCGCGGCTGGGTAGGATCGGTA GACCTTAATGACGACAGCCGTTTTGGTCATGTCGACATGGTAACGGCGATCCGATCGCCGGGATCGGTACTCAAACCCTT TGTGTATGGTCTGGCGCTGGATGACGGCTTGATCCATCCCGCATCACTATTACAGGACGTTCCGCGCCGCACCGGAGATT ACCGCCCGGGAAACTTCGATAGCGGATTTCACGGCCCGGTTAGCATGAGCGACGCGCTGGTACGCTCGCTGAATCTGCCT GCCGTTCAGGTGCTTGAAGCCTATGGGCCGAAACGATTTGCGGCAAAACTGCGTAACGTCGGCCTGCCGCTATATTTGCC TGCTGGCGCGGCGCCCAATCTTTCGCTGATTCTGGGCGGCGCGGGCGCGCGGCTTGACGAGATGGCGGCGGCATACAGCG CGTTCGCTCGTCATGGGAAAGCGGCGAAACTACGGTTACAGCCGGACGATCCGCTGTCGGAAAGACCATTAATGTCGCCG GGAGCGGCGTGGATCATTCGACGGATTATGGCGGATGAAGCGCAACCCTTGCCGGATAACGCGCTGCCGCGCATTGTGCC GTTGGCGTGGAAAACCGGCACCAGCTACGGCTATCGCGATGCGTGGGCTATTGGCGTTAACGCGCGCTATATCATCGGCA TCTGGACAGGCAGACCCGACGGCACGCCTGTGGTGGGGCAATTTGGTTTTGCCAGCGCGGTGCCATTGCTTAACCAGGTC AATAATCTGTTACTGGCGCATACGGGACGCCTGCCGGAAGATCCGCGTCCGCAGACGGTAAGCCGCGGCGTCATTTGCTG GCCGGGCGGACAGACTCTGCCTGCCGGGAACAGCAACTGTCGCCGCCGACTGGCGACATGGCTGCTTGACGACAGCCAGC CGCCCACGCTGCTGTTACCTGAGCAGGAAGACATCAACGGTATTCGTTTCCCGGTCTGGCTGGATGATACGGGGCGGCGT GTCGCTGCCGACTGTCCGCAGGCGCGTGCGCATACGTTTATCGTCTGGCCGCGGCCGCTGGAGCCGTGGCTGCCGCCTGC GGAAAGACGTAGCGCCCGCTTGCCCGCGGCGTCCGACCACTGTCCGCCGCTACAGGGCAATGATGCCGCGCCGTTAATGC TGTCAGGAGTGAGGGATGGCGCGGTGATCAGGCAATTGCCAGGCCAGGAAAACGTCACGCTGCCCGTCTCGACTACCGGC GGCAAAGGGCGTCGCTGGTGGTTTTTAAATGGCGAACCTGTTAATGGCGAAAATAATCGCCTTTCTTTATTACTCAATAT CGCTGGACGTTATCAACTTGTCGTAATGGATGAGTCCGGTCAGGTTGCAGCGGTTAATTTTGAATTAATACGTTAA
Upstream 100 bases:
>100_bases GGGGACGTACCAGCTTGCGCAACCGCAGGTGGAATCGATGTACGCGCCTCAGTGGCGGGCAACCGGCGCGAGCGAGGGAC TGCTGATTGTGACGCCTTAA
Downstream 100 bases:
>100_bases CCATTCTCCAAAATAGATTATCAATTCCTTTTAATTTAAGCTTAATGATAATTGTTAATTATTACTGGATCATACATAAC CGGAGAGCTTGATAAATATC
Product: penicillin-binding protein 1C
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARVVVAHDGTPLWRFADAGGIWRYPVTIEEVSPRYLEAL INYEDRWFWQHPGVNPFSVARAAWQDLTAGRVISGGSTLTMQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLY LNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPTRAEAARNKVLDRMAEQGVWPAETVRES REEPVWLAPRQMPQLAPLFARMMLSKSRSDKIVTTLDAGLQRQLEDLARAWKGRLPARSSLAMIVVDHTDMSVRGWVGSV DLNDDSRFGHVDMVTAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDALVRSLNLP AVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLDEMAAAYSAFARHGKAAKLRLQPDDPLSERPLMSP GAAWIIRRIMADEAQPLPDNALPRIVPLAWKTGTSYGYRDAWAIGVNARYIIGIWTGRPDGTPVVGQFGFASAVPLLNQV NNLLLAHTGRLPEDPRPQTVSRGVICWPGGQTLPAGNSNCRRRLATWLLDDSQPPTLLLPEQEDINGIRFPVWLDDTGRR VAADCPQARAHTFIVWPRPLEPWLPPAERRSARLPAASDHCPPLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTG GKGRRWWFLNGEPVNGENNRLSLLLNIAGRYQLVVMDESGQVAAVNFELIR
Sequences:
>Translated_771_residues MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARVVVAHDGTPLWRFADAGGIWRYPVTIEEVSPRYLEAL INYEDRWFWQHPGVNPFSVARAAWQDLTAGRVISGGSTLTMQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLY LNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPTRAEAARNKVLDRMAEQGVWPAETVRES REEPVWLAPRQMPQLAPLFARMMLSKSRSDKIVTTLDAGLQRQLEDLARAWKGRLPARSSLAMIVVDHTDMSVRGWVGSV DLNDDSRFGHVDMVTAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDALVRSLNLP AVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLDEMAAAYSAFARHGKAAKLRLQPDDPLSERPLMSP GAAWIIRRIMADEAQPLPDNALPRIVPLAWKTGTSYGYRDAWAIGVNARYIIGIWTGRPDGTPVVGQFGFASAVPLLNQV NNLLLAHTGRLPEDPRPQTVSRGVICWPGGQTLPAGNSNCRRRLATWLLDDSQPPTLLLPEQEDINGIRFPVWLDDTGRR VAADCPQARAHTFIVWPRPLEPWLPPAERRSARLPAASDHCPPLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTG GKGRRWWFLNGEPVNGENNRLSLLLNIAGRYQLVVMDESGQVAAVNFELIR >Mature_771_residues MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARVVVAHDGTPLWRFADAGGIWRYPVTIEEVSPRYLEAL INYEDRWFWQHPGVNPFSVARAAWQDLTAGRVISGGSTLTMQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLY LNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPTRAEAARNKVLDRMAEQGVWPAETVRES REEPVWLAPRQMPQLAPLFARMMLSKSRSDKIVTTLDAGLQRQLEDLARAWKGRLPARSSLAMIVVDHTDMSVRGWVGSV DLNDDSRFGHVDMVTAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDALVRSLNLP AVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLDEMAAAYSAFARHGKAAKLRLQPDDPLSERPLMSP GAAWIIRRIMADEAQPLPDNALPRIVPLAWKTGTSYGYRDAWAIGVNARYIIGIWTGRPDGTPVVGQFGFASAVPLLNQV NNLLLAHTGRLPEDPRPQTVSRGVICWPGGQTLPAGNSNCRRRLATWLLDDSQPPTLLLPEQEDINGIRFPVWLDDTGRR VAADCPQARAHTFIVWPRPLEPWLPPAERRSARLPAASDHCPPLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTG GKGRRWWFLNGEPVNGENNRLSLLLNIAGRYQLVVMDESGQVAAVNFELIR
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=763, Percent_Identity=82.175622542595, Blast_Score=1284, Evalue=0.0, Organism=Escherichia coli, GI87082258, Length=248, Percent_Identity=33.8709677419355, Blast_Score=129, Evalue=9e-31, Organism=Escherichia coli, GI1786343, Length=513, Percent_Identity=28.6549707602339, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1789601, Length=144, Percent_Identity=34.7222222222222, Blast_Score=68, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 85196; Mature: 85196
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARVVVAHDGTPLWRFADAG CCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCC GIWRYPVTIEEVSPRYLEALINYEDRWFWQHPGVNPFSVARAAWQDLTAGRVISGGSTLT CEEECCEEHHHCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECCCCHHH MQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLYLNRAPFGGTLQGIGAASWAY HHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCCCCCCCCCCHH FGKPPARLSYADAALLAVLPQAPSRLRPDRWPTRAEAARNKVLDRMAEQGVWPAETVRES CCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHC REEPVWLAPRQMPQLAPLFARMMLSKSRSDKIVTTLDAGLQRQLEDLARAWKGRLPARSS CCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC LAMIVVDHTDMSVRGWVGSVDLNDDSRFGHVDMVTAIRSPGSVLKPFVYGLALDDGLIHP EEEEEEECCCCEEECEEEEEECCCCCCCCCEEEHHHHCCCCHHHHHHHHHEEECCCCCCH ASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDALVRSLNLPAVQVLEAYGPKRFAAKLRNV HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHC GLPLYLPAGAAPNLSLILGGAGARLDEMAAAYSAFARHGKAAKLRLQPDDPLSERPLMSP CCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC GAAWIIRRIMADEAQPLPDNALPRIVPLAWKTGTSYGYRDAWAIGVNARYIIGIWTGRPD CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCC GTPVVGQFGFASAVPLLNQVNNLLLAHTGRLPEDPRPQTVSRGVICWPGGQTLPAGNSNC CCCEEECCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHCCCEEECCCCCCCCCCCHHH RRRLATWLLDDSQPPTLLLPEQEDINGIRFPVWLDDTGRRVAADCPQARAHTFIVWPRPL HHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEECCCC EPWLPPAERRSARLPAASDHCPPLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTG CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCEEEEEECCC GKGRRWWFLNGEPVNGENNRLSLLLNIAGRYQLVVMDESGQVAAVNFELIR CCCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEEEEC >Mature Secondary Structure MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARVVVAHDGTPLWRFADAG CCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCC GIWRYPVTIEEVSPRYLEALINYEDRWFWQHPGVNPFSVARAAWQDLTAGRVISGGSTLT CEEECCEEHHHCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECCCCHHH MQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLYLNRAPFGGTLQGIGAASWAY HHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCCCCCCCCCCHH FGKPPARLSYADAALLAVLPQAPSRLRPDRWPTRAEAARNKVLDRMAEQGVWPAETVRES CCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHC REEPVWLAPRQMPQLAPLFARMMLSKSRSDKIVTTLDAGLQRQLEDLARAWKGRLPARSS CCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC LAMIVVDHTDMSVRGWVGSVDLNDDSRFGHVDMVTAIRSPGSVLKPFVYGLALDDGLIHP EEEEEEECCCCEEECEEEEEECCCCCCCCCEEEHHHHCCCCHHHHHHHHHEEECCCCCCH ASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDALVRSLNLPAVQVLEAYGPKRFAAKLRNV HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHC GLPLYLPAGAAPNLSLILGGAGARLDEMAAAYSAFARHGKAAKLRLQPDDPLSERPLMSP CCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC GAAWIIRRIMADEAQPLPDNALPRIVPLAWKTGTSYGYRDAWAIGVNARYIIGIWTGRPD CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCC GTPVVGQFGFASAVPLLNQVNNLLLAHTGRLPEDPRPQTVSRGVICWPGGQTLPAGNSNC CCCEEECCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHCCCEEECCCCCCCCCCCHHH RRRLATWLLDDSQPPTLLLPEQEDINGIRFPVWLDDTGRRVAADCPQARAHTFIVWPRPL HHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEECCCC EPWLPPAERRSARLPAASDHCPPLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTG CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCEEEEEECCC GKGRRWWFLNGEPVNGENNRLSLLLNIAGRYQLVVMDESGQVAAVNFELIR CCCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]