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The map label for this gene is nifU [H]

Identifier: 29140847

GI number: 29140847

Start: 359311

End: 359697

Strand: Direct

Name: nifU [H]

Synonym: t0314

Alternate gene names: 29140847

Gene position: 359311-359697 (Clockwise)

Preceding gene: 29140846

Following gene: 29140848

Centisome position: 7.5

GC content: 51.16

Gene sequence:

>387_bases
ATGGCTTACAGCGAAAAAGTAATCGATCACTATGAGAACCCGCGTAACGTAGGGTCGTTTGACAACAACGACGATAACGT
GGGAAGCGGTATGGTTGGCGCGCCGGCCTGCGGCGACGTCATGAAGTTGCAGATTAAAGTTAACGATGAAGGTATCATTG
AAGACGCGCGCTTCAAGACTTACGGCTGCGGTTCCGCTATCGCCTCCAGTTCTCTGGTAACGGAGTGGGTGAAAGGGAAA
TCCCTGGACGAAGCGCAGGCGATTAAAAACACCGACATTGCAGACGAACTGGAGCTGCCGCCGGTGAAAATTCACTGCTC
TATTCTGGCGGAAGACGCGATTAAAGCCGCTATTGCGGATTACAAAAGCAAACGCGAAGCGAAATAA

Upstream 100 bases:

>100_bases
TGACCTTTCTCCACTGTGGGAAATGTACAAGCAGGGTGTGGATCTGAACAGCATCGAATGGGCACATCATTAATCGGTAT
CGGAATCAGGAGAATTTATA

Downstream 100 bases:

>100_bases
AATAGAACGTTAACATTGAGGTTTTGTTATGTCGATTACACTTAGCGACAGTGCAGCAGCGCGAGTTAATACCTTCCTGG
CCAACCGTGGTAAAGGGTTT

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK
SLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIADYKSKREAK

Sequences:

>Translated_128_residues
MAYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK
SLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIADYKSKREAK
>Mature_127_residues
AYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKS
LDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIADYKSKREAK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=126, Percent_Identity=75.3968253968254, Blast_Score=206, Evalue=4e-54,
Organism=Homo sapiens, GI24307953, Length=126, Percent_Identity=74.6031746031746, Blast_Score=202, Evalue=8e-53,
Organism=Escherichia coli, GI1788878, Length=128, Percent_Identity=98.4375, Blast_Score=259, Evalue=5e-71,
Organism=Caenorhabditis elegans, GI17543474, Length=126, Percent_Identity=69.8412698412698, Blast_Score=191, Evalue=6e-50,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=72.5806451612903, Blast_Score=192, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=74.1935483870968, Blast_Score=192, Evalue=1e-50,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=74.6031746031746, Blast_Score=203, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13821; Mature: 13689

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH
YKSKREAK
HHHHCCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH
YKSKREAK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]