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The map label for this gene is yfhP [H]

Identifier: 29140845

GI number: 29140845

Start: 357394

End: 357888

Strand: Direct

Name: yfhP [H]

Synonym: t0312

Alternate gene names: 29140845

Gene position: 357394-357888 (Clockwise)

Preceding gene: 29140844

Following gene: 29140846

Centisome position: 7.46

GC content: 55.35

Gene sequence:

>495_bases
ATGAGACTGACATCTAAAGGGCGTTATGCCGTGACCGCAATGTTAGACGTTGCGCTCAACTCCGAAGCGGGCCCGGTACC
GTTGGCTGATATTTCTGAACGTCAGGGGATTTCCCTTTCTTATCTGGAACAGCTATTTTCCCGTTTACGTAAAAACGGTC
TGGTTTCCAGCGTACGCGGGCCGGGCGGCGGTTATCTGCTGGGTAAAGATGCTGGCAGTATCGCGGTCGGCGAAGTGATC
AGCGCGGTTGATGAATCCGTTGACGCGACCCGTTGCCAGGGCAAAGGCGGCTGCCAGGGCGGCGATAAATGCCTGACCCA
TGCGCTGTGGCGTGATTTAAGCGATCGTCTGACCGGTTTTCTCAACAATATTACTTTAGGCGAGCTAGTGAATAACCAGG
AAGTTCTGGATGTGTCTGGTCGCCAGCACACGCATGACGCGCCGCGCGCCAGCGGTCGTGCGCAGGACGCTATCGACGTT
AAATTACGCGCTTAA

Upstream 100 bases:

>100_bases
ACCAATTTACTCGGGAATGTCAGACTTGTCCCTGCTATGCAATACCCCCATTTTACAATAAAAAACCCCGGGCAGGGGCG
AGTTTGAGGTTAAGTAAGAC

Downstream 100 bases:

>100_bases
TTAAAATATTACGCCATCTCTTCTGGCGGCCTCATGCGGTGAATGCCGCGGTCGTCTGAAGGATGAAGCGTAAAAAAGAA
TTCAGAATCAGGCCGGGACG

Product: DNA-binding transcriptional regulator IscR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVI
SAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDV
KLRA

Sequences:

>Translated_164_residues
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVI
SAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDV
KLRA
>Mature_164_residues
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVI
SAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDV
KLRA

Specific function: Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788880, Length=164, Percent_Identity=96.9512195121951, Blast_Score=287, Evalue=2e-79,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010242
- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 17391; Mature: 17391

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG
CCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGF
CCCCEEEECCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDVKLRA
HHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG
CCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGF
CCCCEEEECCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDVKLRA
HHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA