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The map label for this gene is staF [H]

Identifier: 29140726

GI number: 29140726

Start: 211467

End: 212063

Strand: Reverse

Name: staF [H]

Synonym: t0185

Alternate gene names: 29140726

Gene position: 212063-211467 (Counterclockwise)

Preceding gene: 29140727

Following gene: 29140725

Centisome position: 4.43

GC content: 49.92

Gene sequence:

>597_bases
ATGGTGATACCAATGAGACGTTTGCGCGAACCCACGCTCGCCACGTTATTTTCAGGGCTGGCAACAGCCCTGTTTAGCGC
GACGCTGTACGCCGATACCAATGTGAATTTCACCGCCAGCGTGCAGAAGGACACCTGCCAGATAAAGATAGATGGCAATG
GAACGGTAAACTTCGCCACCATAGCGCCCGCCTATTTTGCCGATGGCATTACCGCGGAAACCGATTATGAGGGGGGGAAA
GAGTTCACCATTAAGCTTATTTCTTGCCCGATCAGTGATGGTAAAATAACCAATGTCACCTTTAATTTCGCACCACTAAA
CGGGCAGTTCTCACCTGAGAATCAACAAGTTTTTCCTAATGACATCGCTACCGATGCTGGTGGCGTAGACAATGTCGGCG
TGGTGATTTTCACCACCGATTCACCACGCACCAACGTGCTTAATACGGATGGTTCATCGCGGGCGACTTTTGCTGCCAGC
ACCTACAGCGACACCGTCTGGACCTTTTACTCCAGAATGCAAAAAATACGCAGTGCCGAAAAAGTGACGACCGGTGAACT
TAGCAGCCGTGTACTGGTGAATGTCTCCTATGAATAA

Upstream 100 bases:

>100_bases
CTTTAAGCGCTATGATGGTCGCTCAAAGCGGCGGTACGCTTCAAAATATGACAGCGGGAGATTTCTACTCGCCCACCACC
TTCACCATCACTTACCAGTA

Downstream 100 bases:

>100_bases
TCAGGAGATTTTATTAAACGAAAGGATATCGTTAATATGCTTTTAAAAAACACAACATGGTTTGCCGCCTTTTTCCTGAT
GATGGCTATCATGTCCAACT

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MVIPMRRLREPTLATLFSGLATALFSATLYADTNVNFTASVQKDTCQIKIDGNGTVNFATIAPAYFADGITAETDYEGGK
EFTIKLISCPISDGKITNVTFNFAPLNGQFSPENQQVFPNDIATDAGGVDNVGVVIFTTDSPRTNVLNTDGSSRATFAAS
TYSDTVWTFYSRMQKIRSAEKVTTGELSSRVLVNVSYE

Sequences:

>Translated_198_residues
MVIPMRRLREPTLATLFSGLATALFSATLYADTNVNFTASVQKDTCQIKIDGNGTVNFATIAPAYFADGITAETDYEGGK
EFTIKLISCPISDGKITNVTFNFAPLNGQFSPENQQVFPNDIATDAGGVDNVGVVIFTTDSPRTNVLNTDGSSRATFAAS
TYSDTVWTFYSRMQKIRSAEKVTTGELSSRVLVNVSYE
>Mature_198_residues
MVIPMRRLREPTLATLFSGLATALFSATLYADTNVNFTASVQKDTCQIKIDGNGTVNFATIAPAYFADGITAETDYEGGK
EFTIKLISCPISDGKITNVTFNFAPLNGQFSPENQQVFPNDIATDAGGVDNVGVVIFTTDSPRTNVLNTDGSSRATFAAS
TYSDTVWTFYSRMQKIRSAEKVTTGELSSRVLVNVSYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786329, Length=174, Percent_Identity=37.3563218390805, Blast_Score=109, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21417; Mature: 21417

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIPMRRLREPTLATLFSGLATALFSATLYADTNVNFTASVQKDTCQIKIDGNGTVNFAT
CCCCCHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEEEEECCCCEEEEEE
IAPAYFADGITAETDYEGGKEFTIKLISCPISDGKITNVTFNFAPLNGQFSPENQQVFPN
ECHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
DIATDAGGVDNVGVVIFTTDSPRTNVLNTDGSSRATFAASTYSDTVWTFYSRMQKIRSAE
CCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
KVTTGELSSRVLVNVSYE
CCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MVIPMRRLREPTLATLFSGLATALFSATLYADTNVNFTASVQKDTCQIKIDGNGTVNFAT
CCCCCHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEEEEECCCCEEEEEE
IAPAYFADGITAETDYEGGKEFTIKLISCPISDGKITNVTFNFAPLNGQFSPENQQVFPN
ECHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
DIATDAGGVDNVGVVIFTTDSPRTNVLNTDGSSRATFAASTYSDTVWTFYSRMQKIRSAE
CCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
KVTTGELSSRVLVNVSYE
CCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]