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The map label for this gene is ygbI [H]

Identifier: 29140710

GI number: 29140710

Start: 195583

End: 196350

Strand: Direct

Name: ygbI [H]

Synonym: t0169

Alternate gene names: 29140710

Gene position: 195583-196350 (Clockwise)

Preceding gene: 29140709

Following gene: 29140714

Centisome position: 4.08

GC content: 54.82

Gene sequence:

>768_bases
ATGAAAGGACAACACCGTCTGGATCTCATTGTGGCGTATCTGAAAAACCATACGCTGGTTACGGTAGAACAGCTGGTTGA
GGCGGTTGACGCATCGCCAGCCACTATCCGTCGCGATTTGATCAAGCTGGATGAGCAGGGCGTGATCAGCCGTAGTCATG
GCGGCGTGGCGCTGCGGCGTTTTGAACCCGCCCAGCCCACCACCAATGAAAAACAACTGCGATCGCCCGCTGAAAAACGG
GCGATTGCACGCGTTGCCGCATCGCTGGTCAATGCTGGCGATGCCGTCGTGCTGGATGCCGGTACGACAATGATGGAACT
GGCGAAATGCTTAACCCATCTTCCGCTGCGGGTCATCACCGTCGATCTGCATATTGCGCTGTTTTTAGCTGAGTTCCGGC
AAATTGAAGTGACGATTGTCGGCGGTCGTATCGATGACAGCAGTCAGTCCTGTATCGGTGAGCATGGGCGCAAGCTGTTG
CGCAGCGTTTATCCGAACATCGCGTTTATGAGCTGTAATTCATGGGGGGTAAAAACGGGCGTGACGACCCCAACGGAAGA
TAAGGCCGGGCTTAAACAGGAGATTATTGCTAATGCGCAGCGCAAAGTGTTGCTGGCGGACAGCAGTAAGTATGGCGCGC
ATTCGCTCTTTAATGTGGTGCCGCTTGAGCGCTTTAATGATGTGATTACCGACGTCAATCTGCCGCCGTCAGCGCAGGTT
GAACTAAAAGGGCGCGCTTTTGCGCTAACGCTGGTGCAGCCGGAGTGA

Upstream 100 bases:

>100_bases
TCATGGCACCGCATTTGATATCGCCTGGACGGGAAAAGCAAAATCTGAGAGCATGGCCGTATCGATCAAACTGGCAATGC
AACTGGCATAATTCCCTGTT

Downstream 100 bases:

>100_bases
CAGCGCCGTCAGGCGCTGCCAGTGGTGAATCAGACCGCAGAAATATTGCGGCCGTAGTAAATCTCGCGCATCTCTTTCCA
CAGCGCGGCGGTGATCTGCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKR
AIARVAASLVNAGDAVVLDAGTTMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL
RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFNVVPLERFNDVITDVNLPPSAQV
ELKGRAFALTLVQPE

Sequences:

>Translated_255_residues
MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKR
AIARVAASLVNAGDAVVLDAGTTMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL
RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFNVVPLERFNDVITDVNLPPSAQV
ELKGRAFALTLVQPE
>Mature_255_residues
MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKR
AIARVAASLVNAGDAVVLDAGTTMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL
RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFNVVPLERFNDVITDVNLPPSAQV
ELKGRAFALTLVQPE

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=251, Percent_Identity=34.6613545816733, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=28.4, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789059, Length=250, Percent_Identity=32.8, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1790753, Length=236, Percent_Identity=31.3559322033898, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789829, Length=241, Percent_Identity=29.4605809128631, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787540, Length=236, Percent_Identity=29.2372881355932, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87082344, Length=246, Percent_Identity=27.2357723577236, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790635, Length=247, Percent_Identity=28.7449392712551, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788069, Length=232, Percent_Identity=27.1551724137931, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789170, Length=228, Percent_Identity=27.1929824561404, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787063, Length=230, Percent_Identity=24.3478260869565, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27863; Mature: 27863

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGGVALRR
CCCCHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCCCEEEEE
FEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDAGTTMMELAKCLTHLPLRVIT
ECCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEEEE
VDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLLRSVYPNIAFMSCNSWGVKTG
HHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
VTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFNVVPLERFNDVITDVNLPPSAQV
CCCCCCCCCCHHHHHHHCCHHEEEEECCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCEE
ELKGRAFALTLVQPE
EECCCEEEEEEECCC
>Mature Secondary Structure
MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGGVALRR
CCCCHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCCCEEEEE
FEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDAGTTMMELAKCLTHLPLRVIT
ECCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEEEE
VDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLLRSVYPNIAFMSCNSWGVKTG
HHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
VTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFNVVPLERFNDVITDVNLPPSAQV
CCCCCCCCCCHHHHHHHCCHHEEEEECCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCEE
ELKGRAFALTLVQPE
EECCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]