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The map label for this gene is yicJ [H]

Identifier: 29140696

GI number: 29140696

Start: 174948

End: 176354

Strand: Reverse

Name: yicJ [H]

Synonym: t0155

Alternate gene names: 29140696

Gene position: 176354-174948 (Counterclockwise)

Preceding gene: 29140697

Following gene: 29140695

Centisome position: 3.68

GC content: 50.18

Gene sequence:

>1407_bases
ATGGATAAGGGCAGACTTTCGGTAAGAGAGAAAATCGGGTATGGCATGGGTGACGCCGGATATAACATTATTTTTGGCGC
TATCATGCTGTTTGTTAATTACTTTTATACGGATATTTTTGGTCTTGCCCCAGCGTTAGTCGGTGTTTTACTCCTTTCAG
TACGCGTTATCGATGCCGTTACCGATCCGGTGATGGGCGCGCTTGCCGATCGTACCCAAAGTAAATATGGTCGTTTCCGC
CCCTGGCTACTGTGGATTGCATTTCCCTACGCGCTGTTCAGCGTTCTGATGTTCACGACGCCGGACTGGGGCTATAACAG
CAAAGTTATCTATGCCTTCGTCACCTATTTTCTGCTTTCCGTGACCTATACCGCCATCAATATTCCCTATTGCTCACTGG
GCGGCGTGATCACTAACGATCCAAAAGAGCGCGTAGCCTGTCAGGCTTATCGCTTCGTGTTAGTCGGCATCGCGACGCTG
TTGCTATCGTTAACGCTATTGCCGATGGTGGACTGGTTTGGCGACGGCGACAAAGCCAAAGGCTATCAGTTGGCGATGAC
CGTGCTGGCGATTATCGGCATGGGTATGTTTCTGTTCTGCTTTGCCAGCGTCCGCGAACGCGTTCGCCCTGCCGTTCCGA
CGCACGATGATATGAAGAATGATTTCAAAGATGTGTGGAAAAACGATCAATGGGTACGCATTCTGCTATTGACCTTATGT
AACGTCTGCCCGGGGTTTATCCGTATGGCGGCGACCATGTATTACGTCACCTGGGTGATGGGACAAAGCACCCATTTCGC
TACGCTTTTTATTAGTCTTGGCGTGGTCGGTATGATGATCGGCAGTATGCTGGCAAAAGTCTTAACCGATCGCTGGTGTA
AATTGAAGGTATTTTTCTGGACCAATATCGCGCTGGCGATTTTCTCCTGCGCGTTCTATTTCTTTGACCCGAAAGCCACC
GTGATGATAGTGGCGCTCTACTTCTTGCTCAATATTCTGCATCAGATCCCTTCCCCGTTACACTGGTCGCTGATGGCGGA
CGTCGATGATTACGGCGAATGGAAAACCGGCAAACGCATTACCGGTATTAGCTTCTCCGGTAATCTGTTCTTCCTGAAAC
TGGGCCTGGCGATTGCCGGGGCGATGGTCGGCTTTTTGCTCTCCTGGTACGGTTATGACGCCAGCGCCAAAGCGCAAAGC
GCCTCGGCGATGAACGGTATTATGCTGTTGTTTACCGTTATCCTTGGCGTTGGCTATCTGATTACCGCAGGCGTGGTACG
TCTGCTGAAAGTTGACCGTGAACTGATGAAAAAAATCCAGGACGATTTGGAAAAACGTCGCACTAATTACCGCGAATTGA
GTGAGTTGCAGGAGCTCAAAGCCGCTGAAAGCGTAAGGAAAGCCTGA

Upstream 100 bases:

>100_bases
CGTATAACCATTTTATCCATATCAGCGGCGTGATCCTGCTACGCAAAAAAAAGCTCGCAGGCGAATAATTACCGCCATCA
TCTGATGGGGAGAAGTCTCA

Downstream 100 bases:

>100_bases
TGGCAAACTGGCCAAACCCGTTTATTGAACAACGTGCCGATCCGTTTATTTTACGCGACGGCAGCGATTACTACTTTATT
GCCTCCGTACCGGAATATGA

Product: symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDKGRLSVREKIGYGMGDAGYNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFR
PWLLWIAFPYALFSVLMFTTPDWGYNSKVIYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGDGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKAT
VMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQS
ASAMNGIMLLFTVILGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELKAAESVRKA

Sequences:

>Translated_468_residues
MDKGRLSVREKIGYGMGDAGYNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFR
PWLLWIAFPYALFSVLMFTTPDWGYNSKVIYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGDGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKAT
VMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQS
ASAMNGIMLLFTVILGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELKAAESVRKA
>Mature_468_residues
MDKGRLSVREKIGYGMGDAGYNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFR
PWLLWIAFPYALFSVLMFTTPDWGYNSKVIYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGDGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKAT
VMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQS
ASAMNGIMLLFTVILGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELKAAESVRKA

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI122937339, Length=480, Percent_Identity=22.9166666666667, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI42713696, Length=159, Percent_Identity=27.6729559748428, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87082306, Length=461, Percent_Identity=44.2516268980477, Blast_Score=412, Evalue=1e-116,
Organism=Escherichia coli, GI1786466, Length=448, Percent_Identity=38.3928571428571, Blast_Score=320, Evalue=1e-88,
Organism=Escherichia coli, GI1787902, Length=461, Percent_Identity=30.8026030368764, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI145693206, Length=452, Percent_Identity=25.6637168141593, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI48994989, Length=461, Percent_Identity=27.114967462039, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1790561, Length=458, Percent_Identity=26.8558951965066, Blast_Score=159, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52606; Mature: 52606

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKGRLSVREKIGYGMGDAGYNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAV
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDPVMGALADRTQSKYGRFRPWLLWIAFPYALFSVLMFTTPDWGYNSKVIYAFVTYFLLS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATLLLSLTLLPMVDWFGDGDKAK
HHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFW
HHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHH
TNIALAIFSCAFYFFDPKATVMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHCCCCCCCCEE
TGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQSASAMNGIMLLFTVILGVGYL
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELKAAESVRKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]