Click here to switch to the map view.

The map label for this gene is 28379011

Identifier: 28379011

GI number: 28379011

Start: 2196612

End: 2196974

Strand: Direct

Name: 28379011

Synonym: lp_2448

Alternate gene names: NA

Gene position: 2196612-2196974 (Clockwise)

Preceding gene: 28379006

Following gene: 28379012

Centisome position: 66.4

GC content: 41.05

Gene sequence:

>363_bases
ATGACTATTGGCAAAAGAATAGCAAACCTAAGAAAACAAAAATCTTTAACCCAGCCCATGCTGGCTGACGCAATGAATGT
TAGCCAAAGCACCATCGCAAGTTGGGAAAGTGATAGAAGATCCGTTAGCAACGATGACTTAATAAAGCTATCAGATTACT
TTGGAGTAACAACCGACTACTTGCTTGGAAAGAACGGTACTCCAAAATGGGCCAACGAGAAAGACACTAAAGACTTACAA
GATTTTTTAGATGCGAATGAAGGCTCAATGACCTATGGGGGTGAAGATCTTACTGAAGAAGAAAAACAACAAGTGCGTGT
GGCCATGGCAACAATATTCTGGAAACGCCACAAGCATGATTAG

Upstream 100 bases:

>100_bases
GTCTATTTGTACAAGTCAAGTCTTTTTGTACAAATAAAATAAAAGGTCTGTCCTTTACTATCTGTACAAGCTAAAATACT
AATTGTGGAGGTTATCATAA

Downstream 100 bases:

>100_bases
GAGTTGTACTTATGGATAGAGTAAAAGATATCGTTAAAACTATTGTCAATCGTTATCACACAGCGGACCCGTTTGTAATT
GCGGAAAAGCTTAACATACA

Product: prophage Lp2 protein 9

Products: NA

Alternate protein names: Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDYLLGKNGTPKWANEKDTKDLQ
DFLDANEGSMTYGGEDLTEEEKQQVRVAMATIFWKRHKHD

Sequences:

>Translated_120_residues
MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDYLLGKNGTPKWANEKDTKDLQ
DFLDANEGSMTYGGEDLTEEEKQQVRVAMATIFWKRHKHD
>Mature_119_residues
TIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDYLLGKNGTPKWANEKDTKDLQD
FLDANEGSMTYGGEDLTEEEKQQVRVAMATIFWKRHKHD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13673; Mature: 13542

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHH
LLGKNGTPKWANEKDTKDLQDFLDANEGSMTYGGEDLTEEEKQQVRVAMATIFWKRHKHD
HCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHH
LLGKNGTPKWANEKDTKDLQDFLDANEGSMTYGGEDLTEEEKQQVRVAMATIFWKRHKHD
HCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA