| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is lexA
Identifier: 28378694
GI number: 28378694
Start: 1863769
End: 1864401
Strand: Direct
Name: lexA
Synonym: lp_2063
Alternate gene names: 28378694
Gene position: 1863769-1864401 (Clockwise)
Preceding gene: 28378691
Following gene: 28378695
Centisome position: 56.34
GC content: 45.97
Gene sequence:
>633_bases ATGAGTAAAACATCGGAAAGCAAACAAATGGCCGTTCTTCGCTTTATTTATGAACGTGTCAATGAAAAAGGATACCCGCC AACCGTTCGTGAGATTGGTGAAGCCGTTGACTTATCTTCGACTTCGACCGTTCACGGCCACATTTCACGACTAGAAAAAA AAGGTTACATCCAAAAAGACCCAACTAAGCCACGTGCCATTGAGGTAACGCCAGCCGGTTTCGAAGCACTGGGCGTCGAA ACTACGCCACATCAAATTCCGGTACTTGGAACGGTAACCGCCGGCCAACCAATTCTTGCCGTACAGGAAGCGACGGATTA TTTTCCAATTCCTAAGGAACTTGAATCATTCGGTGGCGACCTTTTCATGCTCACCATCCGTGGCGAAAGTATGATCAATA TCGGTATCATGAATGGTGATCAAGTCATTGTTCGGCGTCAAAGTTCCGCTGACAATGGTGATATCATCATTGCCATGACC GATGAAAATGAAGCGACTTGCAAGCGATTCTTCAAAGAGGCCGATCACTACCGACTACAACCTGAGAACGACACGATGGC CCCAATTATCTTGAACAACGTCTCTGTATTAGGCAAAGTTGTCGGTTTATATCGCGACATGCTGTTTCAGTAA
Upstream 100 bases:
>100_bases AATTAATAGTGTTTGTCAACCGAACATTTGTTTGAAAGCTATGAAACGCTATGCTACAATTGGTTTAACCAATAATGAAA ATAAAAAATGAGGTGCCAAG
Downstream 100 bases:
>100_bases ACTATCACCCACAAGATGACAATTCAATTTGTCATCTTTTTTGTTCGCCAGTTTTTAGAGCAGGTTGATGGCATGCCTAC AGATTTCACTCACAAATATT
Product: LexA repressor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MSKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQKDPTKPRAIEVTPAGFEALGVE TTPHQIPVLGTVTAGQPILAVQEATDYFPIPKELESFGGDLFMLTIRGESMINIGIMNGDQVIVRRQSSADNGDIIIAMT DENEATCKRFFKEADHYRLQPENDTMAPIILNNVSVLGKVVGLYRDMLFQ
Sequences:
>Translated_210_residues MSKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQKDPTKPRAIEVTPAGFEALGVE TTPHQIPVLGTVTAGQPILAVQEATDYFPIPKELESFGGDLFMLTIRGESMINIGIMNGDQVIVRRQSSADNGDIIIAMT DENEATCKRFFKEADHYRLQPENDTMAPIILNNVSVLGKVVGLYRDMLFQ >Mature_209_residues SKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQKDPTKPRAIEVTPAGFEALGVET TPHQIPVLGTVTAGQPILAVQEATDYFPIPKELESFGGDLFMLTIRGESMINIGIMNGDQVIVRRQSSADNGDIIIAMTD ENEATCKRFFKEADHYRLQPENDTMAPIILNNVSVLGKVVGLYRDMLFQ
Specific function: Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, recA interacts with lexA causing an autocatalytic cleavage which disrupts the DNA-binding part of lexA, lea
COG id: COG1974
COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S24 family
Homologues:
Organism=Escherichia coli, GI1790476, Length=208, Percent_Identity=29.8076923076923, Blast_Score=98, Evalue=5e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LEXA_LACPL (Q88VI6)
Other databases:
- EMBL: AL935258 - RefSeq: NP_785586.1 - ProteinModelPortal: Q88VI6 - MEROPS: S24.001 - GeneID: 1061711 - GenomeReviews: AL935263_GR - KEGG: lpl:lp_2063 - NMPDR: fig|220668.1.peg.1720 - HOGENOM: HBG679610 - OMA: IAENPDF - ProtClustDB: PRK00215 - BioCyc: LPLA220668:LP_2063-MONOMER - BRENDA: 3.4.21.88 - GO: GO:0006508 - GO: GO:0006350 - HAMAP: MF_00015 - InterPro: IPR006199 - InterPro: IPR006200 - InterPro: IPR006197 - InterPro: IPR019759 - InterPro: IPR015927 - InterPro: IPR011056 - InterPro: IPR011991 - Gene3D: G3DSA:2.10.109.10 - Gene3D: G3DSA:1.10.10.10 - PRINTS: PR00726 - TIGRFAMs: TIGR00498
Pfam domain/function: PF01726 LexA_DNA_bind; PF00717 Peptidase_S24; SSF51306 Pept_S24_S26_C
EC number: =3.4.21.88
Molecular weight: Translated: 23302; Mature: 23171
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: ACT_SITE 130-130 ACT_SITE 168-168
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQKD CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC PTKPRAIEVTPAGFEALGVETTPHQIPVLGTVTAGQPILAVQEATDYFPIPKELESFGGD CCCCCEEEECCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHCCCC LFMLTIRGESMINIGIMNGDQVIVRRQSSADNGDIIIAMTDENEATCKRFFKEADHYRLQ EEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEEC PENDTMAPIILNNVSVLGKVVGLYRDMLFQ CCCCCCCCEEECCHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKTSESKQMAVLRFIYERVNEKGYPPTVREIGEAVDLSSTSTVHGHISRLEKKGYIQKD CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC PTKPRAIEVTPAGFEALGVETTPHQIPVLGTVTAGQPILAVQEATDYFPIPKELESFGGD CCCCCEEEECCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHCCCC LFMLTIRGESMINIGIMNGDQVIVRRQSSADNGDIIIAMTDENEATCKRFFKEADHYRLQ EEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEEC PENDTMAPIILNNVSVLGKVVGLYRDMLFQ CCCCCCCCEEECCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12566566