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The map label for this gene is lytH [H]

Identifier: 28378624

GI number: 28378624

Start: 1795178

End: 1796026

Strand: Direct

Name: lytH [H]

Synonym: lp_1982

Alternate gene names: 28378624

Gene position: 1795178-1796026 (Clockwise)

Preceding gene: 28378616

Following gene: 28378625

Centisome position: 54.26

GC content: 45.94

Gene sequence:

>849_bases
ATGCAAGTTTTAAAACAATTTTGGCGTCAAATCACAGTCACGGTTATTTTTATTGGCCTAGTGATTGGCTTTGTAGTGCT
ATTAGCGACTAATAACACTGCGACTGTTAACATTGCCAACGTCAATATTCGTAGCGGTCCAGGCATGAGTTACGCGATCG
AGGACGCTACGTCTAAGGGCACCAAGGTCCACATTATGAAACGCAAAAATAATTGGCTATACGTCCGTTATGCGGATCAT
AAATTCGGCTGGATTGCTAGTTGGTTAGTCAACGAACATAACAGTCAGTTGACTAAAACCACCAAAATCTCTGAAGCCAC
CATCGTTTTAGATCCCGGACACGGCGGTTCTGATTCCGGGGCGCTCTCGAGCAAGGGCAAGATGGAAAAAACGTACACGT
TACGGGTCGCTAAAGCTGTAGCTAAAAAGCTCCGGGCTGCTGGCGCACACGTTGTTTTAACCCGTGATTCAGATGAATAC
GTCGGCCTGAGTGCGCGTCCCGCAATCGCAAACAAGCTTCATGCAGACGCCTTCATCAGCTTCCACTTTGACAGCTCACC
AGAAAAAAACACGGCTTCTGGGATCACGACCTATTACTATCATAAGTCAACCTCACTAGCACTAGCCAAGGCGTTAAACA
ATAACGTCTCGACCTTGCCAATTCCTAGTAAAGGAACGGACTTCGGTGACTTTCTGGTCATTCGTGATAATTCACGACCA
TCCGTATTGATGGAACTGGGTTATATTAATGATAAGTCGGACTTCAAGACGATCAGTTCTAAAAAGTACCCTCAAGAAGT
AGCGCACGCGGTTTACGCCGGATTGAGTACCTACTTCGCCAATCAATAA

Upstream 100 bases:

>100_bases
GTTAAAATTATCTCAAGATTTCGTCGGCCAGCTGTTTTTTTGGTATACTATTTGCAGCACTTCAAATTGTAATTATCTTA
AATCTAGTTGGTGACAAAGC

Downstream 100 bases:

>100_bases
TAATGCAGTCAGCATGAAGTCTTTGAAAGTGGCCGTTATTCCAGTGACTGGGATAACGGCCACTTTTCGCGACTATTCAA
TCGATGAATCGCATATCAAC

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MQVLKQFWRQITVTVIFIGLVIGFVVLLATNNTATVNIANVNIRSGPGMSYAIEDATSKGTKVHIMKRKNNWLYVRYADH
KFGWIASWLVNEHNSQLTKTTKISEATIVLDPGHGGSDSGALSSKGKMEKTYTLRVAKAVAKKLRAAGAHVVLTRDSDEY
VGLSARPAIANKLHADAFISFHFDSSPEKNTASGITTYYYHKSTSLALAKALNNNVSTLPIPSKGTDFGDFLVIRDNSRP
SVLMELGYINDKSDFKTISSKKYPQEVAHAVYAGLSTYFANQ

Sequences:

>Translated_282_residues
MQVLKQFWRQITVTVIFIGLVIGFVVLLATNNTATVNIANVNIRSGPGMSYAIEDATSKGTKVHIMKRKNNWLYVRYADH
KFGWIASWLVNEHNSQLTKTTKISEATIVLDPGHGGSDSGALSSKGKMEKTYTLRVAKAVAKKLRAAGAHVVLTRDSDEY
VGLSARPAIANKLHADAFISFHFDSSPEKNTASGITTYYYHKSTSLALAKALNNNVSTLPIPSKGTDFGDFLVIRDNSRP
SVLMELGYINDKSDFKTISSKKYPQEVAHAVYAGLSTYFANQ
>Mature_282_residues
MQVLKQFWRQITVTVIFIGLVIGFVVLLATNNTATVNIANVNIRSGPGMSYAIEDATSKGTKVHIMKRKNNWLYVRYADH
KFGWIASWLVNEHNSQLTKTTKISEATIVLDPGHGGSDSGALSSKGKMEKTYTLRVAKAVAKKLRAAGAHVVLTRDSDEY
VGLSARPAIANKLHADAFISFHFDSSPEKNTASGITTYYYHKSTSLALAKALNNNVSTLPIPSKGTDFGDFLVIRDNSRP
SVLMELGYINDKSDFKTISSKKYPQEVAHAVYAGLSTYFANQ

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788776, Length=218, Percent_Identity=28.4403669724771, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082163, Length=236, Percent_Identity=25, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 30968; Mature: 30968

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLKQFWRQITVTVIFIGLVIGFVVLLATNNTATVNIANVNIRSGPGMSYAIEDATSKG
CHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCC
TKVHIMKRKNNWLYVRYADHKFGWIASWLVNEHNSQLTKTTKISEATIVLDPGHGGSDSG
CEEEEEEECCCEEEEEECCCCCCHHHEEHHCCCCCCCEEEEEECEEEEEEECCCCCCCCC
ALSSKGKMEKTYTLRVAKAVAKKLRAAGAHVVLTRDSDEYVGLSARPAIANKLHADAFIS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCHHHHHHCCCEEEE
FHFDSSPEKNTASGITTYYYHKSTSLALAKALNNNVSTLPIPSKGTDFGDFLVIRDNSRP
EEECCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCC
SVLMELGYINDKSDFKTISSKKYPQEVAHAVYAGLSTYFANQ
EEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQVLKQFWRQITVTVIFIGLVIGFVVLLATNNTATVNIANVNIRSGPGMSYAIEDATSKG
CHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCC
TKVHIMKRKNNWLYVRYADHKFGWIASWLVNEHNSQLTKTTKISEATIVLDPGHGGSDSG
CEEEEEEECCCEEEEEECCCCCCHHHEEHHCCCCCCCEEEEEECEEEEEEECCCCCCCCC
ALSSKGKMEKTYTLRVAKAVAKKLRAAGAHVVLTRDSDEYVGLSARPAIANKLHADAFIS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCHHHHHHCCCEEEE
FHFDSSPEKNTASGITTYYYHKSTSLALAKALNNNVSTLPIPSKGTDFGDFLVIRDNSRP
EEECCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCC
SVLMELGYINDKSDFKTISSKKYPQEVAHAVYAGLSTYFANQ
EEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]