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The map label for this gene is 28378570

Identifier: 28378570

GI number: 28378570

Start: 1742852

End: 1743301

Strand: Direct

Name: 28378570

Synonym: lp_1922

Alternate gene names: NA

Gene position: 1742852-1743301 (Clockwise)

Preceding gene: 28378564

Following gene: 28378573

Centisome position: 52.68

GC content: 44.67

Gene sequence:

>450_bases
ATGCAAGATTCATTAGGAATCATGATTAAGAAAGCGAACAATGCATTAGCCAGGGACTCAGACCATTATGCAAAATCACT
GGGACTAACTGGCATGCAAATCAGTACGATCAACTTTATTGCCAACAATGAACAGCATCACGACCTCTTCCAACGGGACT
TAGAATTAGAGTTCAATATTCGTAAAGCAACCTGTTCCAGCCTCGTTTCCAAAATGGAAGCCGCTGATTTACTCATTCGC
GTGCCAGCAAAGGACGATGGTCGCTACAAACGACTACTCCTAACACCCAAGGCCCGCCAATTAGCCACCAAGATCGAACG
TTTCTTTGAAACCAGTGAACAACGAATGGCGACAATTTTAGGGGTAAATACCGCCGAAACTTACGAAGCCCTGCGACAAA
TTGCCGTTGCTTTTTCAACACCGACCCATGCACCTGAAAATTGGTACTAA

Upstream 100 bases:

>100_bases
TCAAAATTTTAAGCCCTATTTTAATTGACTTTTTAACAATTAGTTCTTATAATTCACTTTAGTTAGAATACGAACCATAA
TATCATTAAGGAGTCCTCCC

Downstream 100 bases:

>100_bases
CCATTCAAAGACCCGCTGACAGTCACTGACTGCTAGCGGGTCTTTGATTTTACGATCAATCAACACCGATTACTCGGCCA
AAAAACGTGTAAACAGCTGT

Product: transcription regulator (putative)

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator MarR Family; Transcription Regulator

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MQDSLGIMIKKANNALARDSDHYAKSLGLTGMQISTINFIANNEQHHDLFQRDLELEFNIRKATCSSLVSKMEAADLLIR
VPAKDDGRYKRLLLTPKARQLATKIERFFETSEQRMATILGVNTAETYEALRQIAVAFSTPTHAPENWY

Sequences:

>Translated_149_residues
MQDSLGIMIKKANNALARDSDHYAKSLGLTGMQISTINFIANNEQHHDLFQRDLELEFNIRKATCSSLVSKMEAADLLIR
VPAKDDGRYKRLLLTPKARQLATKIERFFETSEQRMATILGVNTAETYEALRQIAVAFSTPTHAPENWY
>Mature_149_residues
MQDSLGIMIKKANNALARDSDHYAKSLGLTGMQISTINFIANNEQHHDLFQRDLELEFNIRKATCSSLVSKMEAADLLIR
VPAKDDGRYKRLLLTPKARQLATKIERFFETSEQRMATILGVNTAETYEALRQIAVAFSTPTHAPENWY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16902; Mature: 16902

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSLGIMIKKANNALARDSDHYAKSLGLTGMQISTINFIANNEQHHDLFQRDLELEFNI
CCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCEEEEE
RKATCSSLVSKMEAADLLIRVPAKDDGRYKRLLLTPKARQLATKIERFFETSEQRMATIL
HHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
GVNTAETYEALRQIAVAFSTPTHAPENWY
CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQDSLGIMIKKANNALARDSDHYAKSLGLTGMQISTINFIANNEQHHDLFQRDLELEFNI
CCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCEEEEE
RKATCSSLVSKMEAADLLIRVPAKDDGRYKRLLLTPKARQLATKIERFFETSEQRMATIL
HHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
GVNTAETYEALRQIAVAFSTPTHAPENWY
CCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA