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The map label for this gene is ldcA [C]

Identifier: 28378445

GI number: 28378445

Start: 1603384

End: 1604442

Strand: Direct

Name: ldcA [C]

Synonym: lp_1768

Alternate gene names: 28378445

Gene position: 1603384-1604442 (Clockwise)

Preceding gene: 28378444

Following gene: 28378446

Centisome position: 48.47

GC content: 47.59

Gene sequence:

>1059_bases
TTGAGGAAATACGTCGATTGGAAGTACGTTAAGATTAAAAAGTGCTACACTTATTTTAATTATATTTTAATCTTGTGGGG
TGGGAATACAATGAAAATTGGGACATTTTCTGCATCAACGCCGATTACGGCATTATCGCCAAACCGTTATGCTCGCGCAC
GACGGTTCTTGGCAACCCAAGGAGTGACCTTAGTTGCCGGTAATTTGACGGGACGACGGGATAGTTACCGTGCTGGTTCC
ATCAAAGAACGGGCGGCCGAAATCAACGCGTTAATTCATGATGATTCGCTGGACATCTTGATGGCAACGATTGGTGGGAC
GAACGCAAATTCGGTGCTAGCAATGCTCGATTACGAGTATCTCAATCAGCATCCCAAAATAATTGTCGGTTACTCCGATG
CGACGGCCGTGTTATTGGCGGTGCAAACGCACGCGCCTAATTGTCGTGTGATTTACGGACCGGCCTTAGTAGCCTCACTT
GGCGCCTTAGAGTCAGAGATCGTGACAACCACTTGGCAGAATTTTCTGACAGTCTACCGCGCAGCACCGGGGCAGGCCGT
AACCGAACAGGCACCGGCACAGTGGACGGATGAAGCGGTCAATTGGGAGACCTTTGAACATCCGAAACACATGCACGCAA
ATACTTGGCATTATACGGCGACCCCCATTTTGACTGGCCGTTTGATCGGTGGGAACTTGAACACCATGTATGGGTTCTTT
AACTCACCTTATTTTCCAAAATTAACTGGTAACGAGCTTTTATTTATTGAAGATGCCGAGAAAACTGCAGCAACGCTGGA
AAAAAATTTCGTAATGTTAGCGTTGGCTGGTGTTTTTGATCAAATCTCTGGCATTATTTTGGGAAAACACGCGTTGTACG
ATGATCAAGGCAGCGGGCGGTTGCCAATCGATATCTTACAGGAGGTGCTGGGGGATCACCAATTACCAATTATTTACGAC
TACGATAGCTGCCATACAGTCCCCATGCTCAGTACGCCATTGGGGGCGGATGTCCGGATTGATGCGCAGGCTCGAACGGT
GACGTTTAGTCATTTTTAG

Upstream 100 bases:

>100_bases
AAACGTGGTCACACAATAAGTCAATTAAGTCGCTCAAAACGAGCATAGTCAGTTGATTACTAAACGACTTTCAGCAAGTT
ATTAGCTGAAAGTCGTTTTT

Downstream 100 bases:

>100_bases
ACTACCTTTTGCAATTAAAGACGTTTAGCAAGCTCAAAAACTTTGTAAACCGGCCATACTTACATGCCTGGTATAAGAAT
ACTTGCTTTTTGATAAATGA

Product: bacteriocin immunity protein (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MRKYVDWKYVKIKKCYTYFNYILILWGGNTMKIGTFSASTPITALSPNRYARARRFLATQGVTLVAGNLTGRRDSYRAGS
IKERAAEINALIHDDSLDILMATIGGTNANSVLAMLDYEYLNQHPKIIVGYSDATAVLLAVQTHAPNCRVIYGPALVASL
GALESEIVTTTWQNFLTVYRAAPGQAVTEQAPAQWTDEAVNWETFEHPKHMHANTWHYTATPILTGRLIGGNLNTMYGFF
NSPYFPKLTGNELLFIEDAEKTAATLEKNFVMLALAGVFDQISGIILGKHALYDDQGSGRLPIDILQEVLGDHQLPIIYD
YDSCHTVPMLSTPLGADVRIDAQARTVTFSHF

Sequences:

>Translated_352_residues
MRKYVDWKYVKIKKCYTYFNYILILWGGNTMKIGTFSASTPITALSPNRYARARRFLATQGVTLVAGNLTGRRDSYRAGS
IKERAAEINALIHDDSLDILMATIGGTNANSVLAMLDYEYLNQHPKIIVGYSDATAVLLAVQTHAPNCRVIYGPALVASL
GALESEIVTTTWQNFLTVYRAAPGQAVTEQAPAQWTDEAVNWETFEHPKHMHANTWHYTATPILTGRLIGGNLNTMYGFF
NSPYFPKLTGNELLFIEDAEKTAATLEKNFVMLALAGVFDQISGIILGKHALYDDQGSGRLPIDILQEVLGDHQLPIIYD
YDSCHTVPMLSTPLGADVRIDAQARTVTFSHF
>Mature_352_residues
MRKYVDWKYVKIKKCYTYFNYILILWGGNTMKIGTFSASTPITALSPNRYARARRFLATQGVTLVAGNLTGRRDSYRAGS
IKERAAEINALIHDDSLDILMATIGGTNANSVLAMLDYEYLNQHPKIIVGYSDATAVLLAVQTHAPNCRVIYGPALVASL
GALESEIVTTTWQNFLTVYRAAPGQAVTEQAPAQWTDEAVNWETFEHPKHMHANTWHYTATPILTGRLIGGNLNTMYGFF
NSPYFPKLTGNELLFIEDAEKTAATLEKNFVMLALAGVFDQISGIILGKHALYDDQGSGRLPIDILQEVLGDHQLPIIYD
YDSCHTVPMLSTPLGADVRIDAQARTVTFSHF

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 39032; Mature: 39032

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYVDWKYVKIKKCYTYFNYILILWGGNTMKIGTFSASTPITALSPNRYARARRFLATQ
CCCCCCEEEEEHHHHHEEEEEEEEEECCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHC
GVTLVAGNLTGRRDSYRAGSIKERAAEINALIHDDSLDILMATIGGTNANSVLAMLDYEY
CEEEEEECCCCCCCCCCCCCHHHHHHHHHEEEECCCCEEEEEECCCCCCCCEEEEEEHHH
LNQHPKIIVGYSDATAVLLAVQTHAPNCRVIYGPALVASLGALESEIVTTTWQNFLTVYR
HCCCCEEEEEECCCEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPGQAVTEQAPAQWTDEAVNWETFEHPKHMHANTWHYTATPILTGRLIGGNLNTMYGFF
CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCEEEECC
NSPYFPKLTGNELLFIEDAEKTAATLEKNFVMLALAGVFDQISGIILGKHALYDDQGSGR
CCCCCCCCCCCEEEEEECCCHHHHHHHHCEEEEEHHHHHHHHCCEEEECEEEECCCCCCC
LPIDILQEVLGDHQLPIIYDYDSCHTVPMLSTPLGADVRIDAQARTVTFSHF
CCHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCEEEEEEECC
>Mature Secondary Structure
MRKYVDWKYVKIKKCYTYFNYILILWGGNTMKIGTFSASTPITALSPNRYARARRFLATQ
CCCCCCEEEEEHHHHHEEEEEEEEEECCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHC
GVTLVAGNLTGRRDSYRAGSIKERAAEINALIHDDSLDILMATIGGTNANSVLAMLDYEY
CEEEEEECCCCCCCCCCCCCHHHHHHHHHEEEECCCCEEEEEECCCCCCCCEEEEEEHHH
LNQHPKIIVGYSDATAVLLAVQTHAPNCRVIYGPALVASLGALESEIVTTTWQNFLTVYR
HCCCCEEEEEECCCEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPGQAVTEQAPAQWTDEAVNWETFEHPKHMHANTWHYTATPILTGRLIGGNLNTMYGFF
CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCEEEECC
NSPYFPKLTGNELLFIEDAEKTAATLEKNFVMLALAGVFDQISGIILGKHALYDDQGSGR
CCCCCCCCCCCEEEEEECCCHHHHHHHHCEEEEEHHHHHHHHCCEEEECEEEECCCCCCC
LPIDILQEVLGDHQLPIIYDYDSCHTVPMLSTPLGADVRIDAQARTVTFSHF
CCHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]