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The map label for this gene is smpB

Identifier: 28377651

GI number: 28377651

Start: 735715

End: 736185

Strand: Direct

Name: smpB

Synonym: lp_0799

Alternate gene names: 28377651

Gene position: 735715-736185 (Clockwise)

Preceding gene: 28377650

Following gene: 28377652

Centisome position: 22.24

GC content: 47.35

Gene sequence:

>471_bases
ATGGCCAAACAACACGGTAAGCACCCAGATACCGCCCTCGCTCAAAATCGGAAAGCACGCCATGACTACGCTGTTGAGGA
AACCTATGAAGCTGGCATTGCGCTGACGGGGACGGAAATCAAATCCGTTCGCGATCGGCGGGTCAACTTAAAGGATGGTT
TCGTTCAAGTTCGCAACGGTGAAGCCTGGATGCAAAACGTTCACATTAGTCCGTTTAAAGAGGGTAACCGTTATAACGTT
GACCCGTTGCGGTCCCGGAAACTTTTGTTGCACAAGAAAGAAATCAGTAAGCTAGGTGCAGCAACGATGACTAAGGGTGT
GACGATTATTCCACTTAAGATGTATCTCAAGCATGGATTTGCGAAAGTCTTAATTGGAGTCGCTCACGGAAAACGGGAAT
ACGACAAACGGCAAGATATCAAGAAACGCGAACAACAGCGTCAAATCGACCGGGTTATGAAACATTACTAG

Upstream 100 bases:

>100_bases
AATAATCATAATAGCAACAATAATAATCATAGTACTAACAACAATCGGCGGTCATCAACTGATCGTCGGCGTTAATTTTT
AAGTAAGGGGATGTGCGGCA

Downstream 100 bases:

>100_bases
GCATCGATTACGTTAGCGTTGCATCGCTGCACCATACAACGAGTATGGCAGCGTCATAAAAAGGTCTTCCAAGAATTAAT
TCGATTCTTGGAAGACCTTT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MAKQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRNGEAWMQNVHISPFKEGNRYNV
DPLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLKHGFAKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY

Sequences:

>Translated_156_residues
MAKQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRNGEAWMQNVHISPFKEGNRYNV
DPLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLKHGFAKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY
>Mature_155_residues
AKQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRNGEAWMQNVHISPFKEGNRYNVD
PLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLKHGFAKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=157, Percent_Identity=42.6751592356688, Blast_Score=132, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_LACPL (Q88YG7)

Other databases:

- EMBL:   AL935254
- RefSeq:   NP_784543.1
- ProteinModelPortal:   Q88YG7
- SMR:   Q88YG7
- GeneID:   1063857
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_0799
- NMPDR:   fig|220668.1.peg.677
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   LPLA220668:LP_0799-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18071; Mature: 17940

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRNG
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCEEEEECC
EAWMQNVHISPFKEGNRYNVDPLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLKHGF
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
AKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRNG
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCEEEEECC
EAWMQNVHISPFKEGNRYNVDPLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLKHGF
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
AKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566