Click here to switch to the map view.

The map label for this gene is yjiF [H]

Identifier: 28377635

GI number: 28377635

Start: 715396

End: 716397

Strand: Direct

Name: yjiF [H]

Synonym: lp_0780

Alternate gene names: 28377635

Gene position: 715396-716397 (Clockwise)

Preceding gene: 28377634

Following gene: 28377636

Centisome position: 21.62

GC content: 44.21

Gene sequence:

>1002_bases
ATGAGAAAATACACATTTAAGACCCAGCGGCCTAAAATTGTGGTGATTGGTGGAGGGACCGGTTTGCCGGTTGTTCTGAA
CGGCTTGCGTAAGCAGGCAGTCGATATTACCGCAGTGGTGACGGTGGCTGATGATGGTGGGTCATCCGGCATTATTCGCA
ATTACGTTAACGTGGTTCCACCTGGTGATATTCGTAATGTAATGGTGGCGTTGTCGAGTTGGCCGGATTTGTATAAAGAT
ATTTTTCAGTATCGTTTCCAGGGTGATGATCAATTTTTTGCAGGTCATGCGATTGGTAATTTAATTATTGCGGCACTAAC
GGAAATGAAATCTGGGGTGTTTGACGCGGTGCAGGAATTATCAAATATGATGCAAGTAGATGGTCATGTTTACCCGGCAG
CCAACGAGGCACTCACGCTACATGGTAAGTTTAGTGACGGTACCGAGTTAGTAGGTGAAGCCGAAATTACCGCGGCCCAT
AAGTCATTGGAACGCGTTTGGGTCACTGACAAGAATGGTAAGGAACCACAAGCAGTTCAACCAGTTATTGATGCGATTAT
GGCGGCAGATCAGATTGTTTTGGGGCCCGGTAGTTTGTTTACCAGTATTCTACCGAACCTAACGATTGGAAATATTGGTC
GGGCCGTCTGTGAGTCTGATGCAGAAGTGGTTTATATTTGTAATATTATGACTCAAAAAGGTGAAACGGATAATTTCTCC
GATGCTGATCATGTACGGGTCTTAAACCGCCATTTGGGGCAGAACTTTATTAATACGGTGTTAGTTAACACCGAAAAAGT
GCCAGAAGATTACATGGATTTTCATAAGTTTAACGAAGTTTCAAAGCAAGTGAGTCATGACTTCCGGGGGTTACGTGAAC
AAAACTGTCGCGTAATCTCATCGAACTTCTTGAAACTCCGTGATAATGGGGCCTTTCATGATGGCGACCAAGTTGTCGCT
GAATTAATGAATCTAGTCGGTCATTCCGACGTTTTCAGATAA

Upstream 100 bases:

>100_bases
TTGCCTTGACGCAACGTATCGGTGAAGCGCTGGCTAAGCACTACAAGGTGCACATCAGTCATCGTGATATTGAGAAACGA
AAGGAAACTGTTAATCGCTC

Downstream 100 bases:

>100_bases
GGGGGTCGTGGCATGTCATACGCCAGTGACGTTAAGAAAGAATTGACTAACCTCGCTGTCCATCGCGAGAATGCTAAGGC
TGAATTAATGGCTTTGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRKYTFKTQRPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVMVALSSWPDLYKD
IFQYRFQGDDQFFAGHAIGNLIIAALTEMKSGVFDAVQELSNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAH
KSLERVWVTDKNGKEPQAVQPVIDAIMAADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFS
DADHVRVLNRHLGQNFINTVLVNTEKVPEDYMDFHKFNEVSKQVSHDFRGLREQNCRVISSNFLKLRDNGAFHDGDQVVA
ELMNLVGHSDVFR

Sequences:

>Translated_333_residues
MRKYTFKTQRPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVMVALSSWPDLYKD
IFQYRFQGDDQFFAGHAIGNLIIAALTEMKSGVFDAVQELSNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAH
KSLERVWVTDKNGKEPQAVQPVIDAIMAADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFS
DADHVRVLNRHLGQNFINTVLVNTEKVPEDYMDFHKFNEVSKQVSHDFRGLREQNCRVISSNFLKLRDNGAFHDGDQVVA
ELMNLVGHSDVFR
>Mature_333_residues
MRKYTFKTQRPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVMVALSSWPDLYKD
IFQYRFQGDDQFFAGHAIGNLIIAALTEMKSGVFDAVQELSNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAH
KSLERVWVTDKNGKEPQAVQPVIDAIMAADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFS
DADHVRVLNRHLGQNFINTVLVNTEKVPEDYMDFHKFNEVSKQVSHDFRGLREQNCRVISSNFLKLRDNGAFHDGDQVVA
ELMNLVGHSDVFR

Specific function: Unknown

COG id: COG0391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0052 family [H]

Homologues:

Organism=Escherichia coli, GI1786997, Length=252, Percent_Identity=30.5555555555556, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002882
- InterPro:   IPR010119 [H]

Pfam domain/function: PF01933 UPF0052 [H]

EC number: NA

Molecular weight: Translated: 36605; Mature: 36605

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYTFKTQRPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVP
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHCCC
PGDIRNVMVALSSWPDLYKDIFQYRFQGDDQFFAGHAIGNLIIAALTEMKSGVFDAVQEL
CCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAHKSLERVWVTDKNGKEPQAVQ
HHHHHHCCCEECCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHEEEEECCCCCCCHHHH
PVIDAIMAADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFS
HHHHHHHHCCCEEECCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
DADHVRVLNRHLGQNFINTVLVNTEKVPEDYMDFHKFNEVSKQVSHDFRGLREQNCRVIS
CHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
SNFLKLRDNGAFHDGDQVVAELMNLVGHSDVFR
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRKYTFKTQRPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVP
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHCCC
PGDIRNVMVALSSWPDLYKDIFQYRFQGDDQFFAGHAIGNLIIAALTEMKSGVFDAVQEL
CCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAHKSLERVWVTDKNGKEPQAVQ
HHHHHHCCCEECCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHEEEEECCCCCCCHHHH
PVIDAIMAADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFS
HHHHHHHHCCCEEECCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
DADHVRVLNRHLGQNFINTVLVNTEKVPEDYMDFHKFNEVSKQVSHDFRGLREQNCRVIS
CHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
SNFLKLRDNGAFHDGDQVVAELMNLVGHSDVFR
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]