| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is rhlG [H]
Identifier: 28199643
GI number: 28199643
Start: 2064156
End: 2064941
Strand: Reverse
Name: rhlG [H]
Synonym: PD1772
Alternate gene names: 28199643
Gene position: 2064941-2064156 (Counterclockwise)
Preceding gene: 28199644
Following gene: 28199642
Centisome position: 81.95
GC content: 53.82
Gene sequence:
>786_bases TTGAGGACTATGACCCAATCCCGTTGGCGTTTGGATGGTCGTACGGCTTTGATCACGGGGGCTAGTACAGGTATCGGTCT GGCTGTTGCTCGTGAGTTGTTGGGCCTGGGTGCCGATGTGCTGTTGGTAGCGCGTGATGCTGATTTGCTGGGGCGAGTAC GCGATGAACTGGCAGAGGAATTCCCTGAGCGTGAGTTACATGGATTGGCTGCTGATGTTGCTGACGATGTGGACCGCCGT GCGATTCTGGATTGGGTCGAAGATTGCAGTAATGGTTTGCATGTGTTGATCAACAATGCTGGTGGCAATGTGACGCGTGC AGCGCTTGAATATACAGAAGACGAGTGGCGTGAGATTTTCGAGATCAATCTGTTCTCTGCGTTCGAGTTGTGTCGTTACA CGCAGCCGTTGTTGGCGTGTCATGCAAGTACGGCGATTGTCAATATTGGCAGTGTATCTGGCTTGACGCATGTGCGCAGT GGAGTGCCGTATGGGATGAGCAAGGCGGCGTTGCACCAAATGACCCGCAATTTGGCTGTGGAATGGGCTGAGGATGGGAT CCGTGTCAATGCGGTAGCGCCTTGGTATATCCGTACGCGTCGTACGTCGGAGCCGCTCTCTGATCTGTACTATTACGAGC AAGTCATTGAACGTACGCCGATGCGCCGCATTGGAGAGCCGGAGGAAGTGGCTGCGGCAGTGGCATTTCTTTGTTTGCCA GCGTCCAGTTATGTGACCGGCGAATGTATTGCGGTGGATGGCGGTTTTATGCGCTATGGTTTCTGA
Upstream 100 bases:
>100_bases GATGTGCCGCCACCACCTGAGACCCCGAGTGGCGGCAAAGATACGTCCCCTGTTTCTGGGAAGCGATCGCACTTGCGCGT AGTGAAGTAATAACAAGCAG
Downstream 100 bases:
>100_bases TTAAAGGCGTACATGTCATTGTTGAATCAGTAGCGAATTCGTATCAGGGCTTTTAATAAAATTCCTGGATGTGTGCTTTG TATTGATGTCTCGTTGCTTC
Product: tropinone reductase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MRTMTQSRWRLDGRTALITGASTGIGLAVARELLGLGADVLLVARDADLLGRVRDELAEEFPERELHGLAADVADDVDRR AILDWVEDCSNGLHVLINNAGGNVTRAALEYTEDEWREIFEINLFSAFELCRYTQPLLACHASTAIVNIGSVSGLTHVRS GVPYGMSKAALHQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSEPLSDLYYYEQVIERTPMRRIGEPEEVAAAVAFLCLP ASSYVTGECIAVDGGFMRYGF
Sequences:
>Translated_261_residues MRTMTQSRWRLDGRTALITGASTGIGLAVARELLGLGADVLLVARDADLLGRVRDELAEEFPERELHGLAADVADDVDRR AILDWVEDCSNGLHVLINNAGGNVTRAALEYTEDEWREIFEINLFSAFELCRYTQPLLACHASTAIVNIGSVSGLTHVRS GVPYGMSKAALHQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSEPLSDLYYYEQVIERTPMRRIGEPEEVAAAVAFLCLP ASSYVTGECIAVDGGFMRYGF >Mature_261_residues MRTMTQSRWRLDGRTALITGASTGIGLAVARELLGLGADVLLVARDADLLGRVRDELAEEFPERELHGLAADVADDVDRR AILDWVEDCSNGLHVLINNAGGNVTRAALEYTEDEWREIFEINLFSAFELCRYTQPLLACHASTAIVNIGSVSGLTHVRS GVPYGMSKAALHQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSEPLSDLYYYEQVIERTPMRRIGEPEEVAAAVAFLCLP ASSYVTGECIAVDGGFMRYGF
Specific function: Required for the synthesis of the beta-hydroxy acid moiety of rhamnolipids [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=31.0077519379845, Blast_Score=144, Evalue=9e-35, Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=30.4878048780488, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=33.8345864661654, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=32.2448979591837, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=31.7269076305221, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=28.6290322580645, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=30.0813008130081, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=30.3643724696356, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=27.843137254902, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7705855, Length=199, Percent_Identity=28.1407035175879, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI59889578, Length=217, Percent_Identity=29.4930875576037, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=28.2352941176471, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI226371731, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=28.042328042328, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI109715829, Length=256, Percent_Identity=29.296875, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=31.7460317460317, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.5490196078431, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=34, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=30.1587301587302, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789208, Length=260, Percent_Identity=30.3846153846154, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=26.8482490272374, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=34, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1788459, Length=167, Percent_Identity=35.3293413173653, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=30.7086614173228, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.0632411067194, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=30.5699481865285, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=23.5521235521236, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787545, Length=262, Percent_Identity=30.9160305343511, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=31.9838056680162, Blast_Score=132, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=31.6205533596838, Blast_Score=127, Evalue=5e-30, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=32.3076923076923, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=32.3076923076923, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=31.0344827586207, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.9545454545455, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.5384615384615, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=30.241935483871, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=31.5384615384615, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=31.2977099236641, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=31.8007662835249, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=30.6201550387597, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=31.6793893129771, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17536025, Length=268, Percent_Identity=31.7164179104478, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=30.1526717557252, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=28.6274509803922, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.5660377358491, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=29.6153846153846, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=28.735632183908, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=29.5275590551181, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=29.1187739463602, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17536651, Length=266, Percent_Identity=29.6992481203008, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.1740890688259, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=31.8548387096774, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=273, Percent_Identity=30.03663003663, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=32.6923076923077, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=28.3582089552239, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=26.8, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=27.7992277992278, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71997099, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559552, Length=232, Percent_Identity=25, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17557668, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=273, Percent_Identity=25.6410256410256, Blast_Score=89, Evalue=8e-19, Organism=Saccharomyces cerevisiae, GI6323882, Length=204, Percent_Identity=29.9019607843137, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322067, Length=182, Percent_Identity=31.3186813186813, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=263, Percent_Identity=26.615969581749, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=32.258064516129, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.0677290836653, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=32, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=32.4110671936759, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=30.6451612903226, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=32, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=29.4820717131474, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644337, Length=262, Percent_Identity=36.6412213740458, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=28.8659793814433, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=29.7029702970297, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584744, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=25.5905511811024, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI281364892, Length=207, Percent_Identity=25.6038647342995, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007234, Length=94, Percent_Identity=41.4893617021277, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007232, Length=94, Percent_Identity=41.4893617021277, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI22024069, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI18859837, Length=246, Percent_Identity=24.7967479674797, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 28854; Mature: 28854
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTMTQSRWRLDGRTALITGASTGIGLAVARELLGLGADVLLVARDADLLGRVRDELAEE CCCCCCCHHEECCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH FPERELHGLAADVADDVDRRAILDWVEDCSNGLHVLINNAGGNVTRAALEYTEDEWREIF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCHHHHHHHH EINLFSAFELCRYTQPLLACHASTAIVNIGSVSGLTHVRSGVPYGMSKAALHQMTRNLAV HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH EWAEDGIRVNAVAPWYIRTRRTSEPLSDLYYYEQVIERTPMRRIGEPEEVAAAVAFLCLP HHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHC ASSYVTGECIAVDGGFMRYGF CCCCCCCEEEEECCCEEECCC >Mature Secondary Structure MRTMTQSRWRLDGRTALITGASTGIGLAVARELLGLGADVLLVARDADLLGRVRDELAEE CCCCCCCHHEECCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH FPERELHGLAADVADDVDRRAILDWVEDCSNGLHVLINNAGGNVTRAALEYTEDEWREIF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCHHHHHHHH EINLFSAFELCRYTQPLLACHASTAIVNIGSVSGLTHVRSGVPYGMSKAALHQMTRNLAV HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH EWAEDGIRVNAVAPWYIRTRRTSEPLSDLYYYEQVIERTPMRRIGEPEEVAAAVAFLCLP HHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHC ASSYVTGECIAVDGGFMRYGF CCCCCCCEEEEECCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9721281; 10984043 [H]