Click here to switch to the map view.

The map label for this gene is yhdJ [C]

Identifier: 28199526

GI number: 28199526

Start: 1908267

End: 1908791

Strand: Reverse

Name: yhdJ [C]

Synonym: PD1649

Alternate gene names: 28199526

Gene position: 1908791-1908267 (Counterclockwise)

Preceding gene: 28199527

Following gene: 28199525

Centisome position: 75.75

GC content: 45.33

Gene sequence:

>525_bases
ATGCCGCATGACGAATATGTGCGGTGGCAAAGGGATTGTCTAACTGAAATGATGCGCTTGCTTCGCAACGATGGTGCAAT
TTTCTATAACCATAAGTGGAGAGTGCAAGCGGGGCTTTTGCAAGATCGTACTGACATTGTTACAGGGTTCCCTGTGCGGC
AAATCATCATTTGGCAGCGTAATGGCGGGATTAACTTCAATTCCGGCTATTTTTTGCCAACGTATGAGGTGATCTACTTA
ATCGCAAAACCAGACTTCAAACTGAAGCCAAAAGCAAACGCCATAGGCGATGTGTGGACTATCCCGCAAGAATCAAAGAA
CCCACACCCTGCTCCATTTCCTGTCGAATTAGCGCAACGCTGTATTGAGTCTGTGGGTGCTGAACCTGTTTTAGACCCAT
TTATGGGGAGTGGAACAATTGCAGTTGCGGCTGAAATATTGGGTTATGACTGGGTTGGAATCGAAAAATCGCCTAAATAC
GTTGAAATGTCACTTGATAGGCTAAAGAGCCTCAAAGGAAAATAG

Upstream 100 bases:

>100_bases
CAATCTGAAAAATTCTACGGGGAATGGCATGAAGGATGGGCGTGGCGGCAAGTGAGCAAACGGGGCTCTTATCGAAGGTT
TCGATAATCACGAAGATGTT

Downstream 100 bases:

>100_bases
TGACATCATGATTGCAGAAGACGTTTTTTTTCGAGAGTACGAGGCGTCTTGCAAAATGATTGGGTACAGCTTCCAGACTA
TCCGGGCTACAGAGGTACAG

Product: DNA modification methylase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: DNA Methylase; DNA Methylase N-4/N-6 Domain Protein; N6 Adenine-Specific DNA Methyltransferase; DNA Methyltransferase; DNA Methylase; Site-Specific DNA-Methyltransferase; BstYI Methyltransferase; DNA Methylase-Like; M4C-Methyltransferase; DNA Methylase-Like Protein

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MPHDEYVRWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYL
IAKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKY
VEMSLDRLKSLKGK

Sequences:

>Translated_174_residues
MPHDEYVRWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYL
IAKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKY
VEMSLDRLKSLKGK
>Mature_173_residues
PHDEYVRWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQRNGGINFNSGYFLPTYEVIYLI
AKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQRCIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYV
EMSLDRLKSLKGK

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 19865; Mature: 19734

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHDEYVRWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQR
CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCHHCCCCCEEEEEEEEC
NGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQR
CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
CIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK
HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PHDEYVRWQRDCLTEMMRLLRNDGAIFYNHKWRVQAGLLQDRTDIVTGFPVRQIIIWQR
CCHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCHHCCCCCEEEEEEEEC
NGGINFNSGYFLPTYEVIYLIAKPDFKLKPKANAIGDVWTIPQESKNPHPAPFPVELAQR
CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
CIESVGAEPVLDPFMGSGTIAVAAEILGYDWVGIEKSPKYVEMSLDRLKSLKGK
HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA