| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is hflK [H]
Identifier: 28199507
GI number: 28199507
Start: 1887361
End: 1888500
Strand: Reverse
Name: hflK [H]
Synonym: PD1630
Alternate gene names: 28199507
Gene position: 1888500-1887361 (Counterclockwise)
Preceding gene: 28199510
Following gene: 28199506
Centisome position: 74.95
GC content: 54.21
Gene sequence:
>1140_bases ATGGCTTGGAACATACCTGGAAGCAAGGGTAAACATGCTTCAGAGTCGCAACATCGTGGTTCAGGTCCGTTACGTGGTGG CGGTAATGGCGGTGGTTTCTGGAAGGTGCCAGGGCCACTTAAGGATTTATTTGATGCGGGTATCCTGAGTTGGGTGCTGA TTGGGGTGCTTTTGATCGTGGTCTTCTCTAGTGTCCAGTTAATTGGCGAGCAGCAGCGTGGTGTGGTGCTGCGCTTTGGG CAGTTTGTGAGGGTGTTGCAGCCGGGGTTGAGCCTCAAGCTGCCGTGGCCCGTGGAGTCGGTGTATAAGGTCAACGCCAC CGAGATTAAGACTTTCGGTAAGCAGGTCCCTGTGTTGACCCGTGACGAGAACATAGTGAATGTCACGCTCAATGTGCAGT ACCAGATTAATGACCCGCACCTATACTTGTATGGCTCGCGTAATGCGAATGAAGTGCTGGTTCAGGCTGCCCAAAGTGCG GTCCGTGAACAAGTGGGTCGATCCGATCTCAACTCGGTACTCAATAACCGTGGTCCCTTGTCGACAGCCTCTAAAGAGCG TTTACAGGCATCGTTGGATGCTTACCGTACTGGTCTGTTGGTCACTGGTTTGACTTTGCCTGACGCACGCCCCCCAGAGG AAGTGAAGTCGGCTTTTGATGAGGTGAATGGTGCTCAGCAGGTACGTGAGCGCCTTATTGATGAGGCTCAGGCTTATGCC GCCAAGGTTGTTCCTGAGGCACGTGGCCGTGCGGCTAGTAACCGTACGGCGGCTGAGGGATATAAGCAGGCGGTGATTGC ACGTGCACAGGGAGATGCTGACCGTTTTACTCTTCTGCAGGCCCAATACAAGAACGCTCCGGAGGTTACGCGTAAGCGTT TGTGGTTGGAGACAATACAGCAGGTCCTGGAACAGAATCGTAAGGTGATCGGTGCCGATGGCCGTCAATTGATTTATGTG CCGATAGCATCGGACGTGCCACGTCTACCGGCTACTACCATCCAGGGAGGGGTGGGCAATGCGCCTCCGGTGTCACAGGA TCTATTGATCCCCGAATCGCTTAGCAAGCCATCTAATGAGAATATCCGTAATCCGCAGCGCGTTGTCCGTCCTGCAGGCC GTGAAGGAGCTCCTCTATGA
Upstream 100 bases:
>100_bases TATCTACCCCATACCCATAAGTTTGTACAATTCTCGGATTCATTCATCATGGCGGCAATGCGGGATTACCCCCGCTCCGC CTTTCCATCATGGAGTATGC
Downstream 100 bases:
>100_bases AAAATTATTTGTGGATTGTTGTTACGGCTGTGCTTTTTCTTAGTTTGTTCAGCTCGATCTTTGTAGTGCGCGAGGATCAG ACTGCGATGGTCATCAATCT
Product: HflK protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MAWNIPGSKGKHASESQHRGSGPLRGGGNGGGFWKVPGPLKDLFDAGILSWVLIGVLLIVVFSSVQLIGEQQRGVVLRFG QFVRVLQPGLSLKLPWPVESVYKVNATEIKTFGKQVPVLTRDENIVNVTLNVQYQINDPHLYLYGSRNANEVLVQAAQSA VREQVGRSDLNSVLNNRGPLSTASKERLQASLDAYRTGLLVTGLTLPDARPPEEVKSAFDEVNGAQQVRERLIDEAQAYA AKVVPEARGRAASNRTAAEGYKQAVIARAQGDADRFTLLQAQYKNAPEVTRKRLWLETIQQVLEQNRKVIGADGRQLIYV PIASDVPRLPATTIQGGVGNAPPVSQDLLIPESLSKPSNENIRNPQRVVRPAGREGAPL
Sequences:
>Translated_379_residues MAWNIPGSKGKHASESQHRGSGPLRGGGNGGGFWKVPGPLKDLFDAGILSWVLIGVLLIVVFSSVQLIGEQQRGVVLRFG QFVRVLQPGLSLKLPWPVESVYKVNATEIKTFGKQVPVLTRDENIVNVTLNVQYQINDPHLYLYGSRNANEVLVQAAQSA VREQVGRSDLNSVLNNRGPLSTASKERLQASLDAYRTGLLVTGLTLPDARPPEEVKSAFDEVNGAQQVRERLIDEAQAYA AKVVPEARGRAASNRTAAEGYKQAVIARAQGDADRFTLLQAQYKNAPEVTRKRLWLETIQQVLEQNRKVIGADGRQLIYV PIASDVPRLPATTIQGGVGNAPPVSQDLLIPESLSKPSNENIRNPQRVVRPAGREGAPL >Mature_378_residues AWNIPGSKGKHASESQHRGSGPLRGGGNGGGFWKVPGPLKDLFDAGILSWVLIGVLLIVVFSSVQLIGEQQRGVVLRFGQ FVRVLQPGLSLKLPWPVESVYKVNATEIKTFGKQVPVLTRDENIVNVTLNVQYQINDPHLYLYGSRNANEVLVQAAQSAV REQVGRSDLNSVLNNRGPLSTASKERLQASLDAYRTGLLVTGLTLPDARPPEEVKSAFDEVNGAQQVRERLIDEAQAYAA KVVPEARGRAASNRTAAEGYKQAVIARAQGDADRFTLLQAQYKNAPEVTRKRLWLETIQQVLEQNRKVIGADGRQLIYVP IASDVPRLPATTIQGGVGNAPPVSQDLLIPESLSKPSNENIRNPQRVVRPAGREGAPL
Specific function: HflC and HflK could encode or regulate a protease [H]
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the band 7/mec-2 family. HflK subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790616, Length=381, Percent_Identity=32.0209973753281, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1786697, Length=222, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI45550506, Length=213, Percent_Identity=25.3521126760563, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 - InterPro: IPR010201 - InterPro: IPR020980 - InterPro: IPR001972 [H]
Pfam domain/function: PF01145 Band_7; PF12221 HflK_N [H]
EC number: NA
Molecular weight: Translated: 41260; Mature: 41128
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWNIPGSKGKHASESQHRGSGPLRGGGNGGGFWKVPGPLKDLFDAGILSWVLIGVLLIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH VFSSVQLIGEQQRGVVLRFGQFVRVLQPGLSLKLPWPVESVYKVNATEIKTFGKQVPVLT HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEECCCCHHHHHCCCHHHHHHHHCCCCEEE RDENIVNVTLNVQYQINDPHLYLYGSRNANEVLVQAAQSAVREQVGRSDLNSVLNNRGPL CCCCEEEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCC STASKERLQASLDAYRTGLLVTGLTLPDARPPEEVKSAFDEVNGAQQVRERLIDEAQAYA CHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AKVVPEARGRAASNRTAAEGYKQAVIARAQGDADRFTLLQAQYKNAPEVTRKRLWLETIQ HHHCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH QVLEQNRKVIGADGRQLIYVPIASDVPRLPATTIQGGVGNAPPVSQDLLIPESLSKPSNE HHHHHCCEEECCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCC NIRNPQRVVRPAGREGAPL CCCCHHHHHCCCCCCCCCC >Mature Secondary Structure AWNIPGSKGKHASESQHRGSGPLRGGGNGGGFWKVPGPLKDLFDAGILSWVLIGVLLIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH VFSSVQLIGEQQRGVVLRFGQFVRVLQPGLSLKLPWPVESVYKVNATEIKTFGKQVPVLT HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEECCCCHHHHHCCCHHHHHHHHCCCCEEE RDENIVNVTLNVQYQINDPHLYLYGSRNANEVLVQAAQSAVREQVGRSDLNSVLNNRGPL CCCCEEEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCC STASKERLQASLDAYRTGLLVTGLTLPDARPPEEVKSAFDEVNGAQQVRERLIDEAQAYA CHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AKVVPEARGRAASNRTAAEGYKQAVIARAQGDADRFTLLQAQYKNAPEVTRKRLWLETIQ HHHCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH QVLEQNRKVIGADGRQLIYVPIASDVPRLPATTIQGGVGNAPPVSQDLLIPESLSKPSNE HHHHHCCEEECCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCC NIRNPQRVVRPAGREGAPL CCCCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]