Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199065
Identifier: 28199065
GI number: 28199065
Start: 1378273
End: 1379418
Strand: Reverse
Name: 28199065
Synonym: PD1175
Alternate gene names: NA
Gene position: 1379418-1378273 (Counterclockwise)
Preceding gene: 28199068
Following gene: 28199064
Centisome position: 54.74
GC content: 56.63
Gene sequence:
>1146_bases ATGGGAAAAGTCACCACCAGCGGATACGAAGCCGAGCGGCTGGATACGATCATTGCCCGCTTGCAAGAAGGCTTCCGCTC GATTTACGGCAACGATATCAACGTTGATCCAGACAGCCCCGATGGACAGTTGATTGGCCTGATTGCACAGATAAAAGCCG ATCTGGAAGAACTGGGCACGGACATCCACCGGCAACTGGACCCCGATTACGCCAGTGGCGCGTGGCTAGAACAACGCGTG GCCTATGCAGGCCTCACCCGCAGGCGAGCCAGCTACAGCTACTTACGCAATGTCACTTTGACCGGCAAACCCGATGCCTC GATCCCGGCAGGGTATGTTGTTTCAGATCCCAATCGCTGCCGCTGGCAGCTCGTGTCACCCGTGCGCCTGGATGCCACCG GCCACGCACATGCAGACTTTCGCAATGATACCTTAGGCCGTTTTGACGTCCCGGCACACACCGCCCTGACCATTGAAACC GTGGCCCTGGGCTGGGACCGGGCCATCACCACCGAAGACGCCGAGGCAGGGGCAGAAGAAGAGCACGATGCGGCCCTGCG CGCCCGCTTCTTTAAAAGCCGTGCCAAGACATCCACCAACAATGCTGACAGCATCCAGGCCACGCTCTGGGGGCTACCCG ACGTGCGCCACGTCGTCTGCTTAGAAAACTTCACCGATACTGTGGATGCTGCGGGAGTCCCCGCCCACGGCATTAACGTC ATTGTGGAGGGGGGCCGGGATGACGCCATTGCTGAAGTGATCTATCACCATAAAACACTCGGTACAAACATGCGTGGTGA GGTACGGGTACAGATTAAAAACAAACACGGCCAACCTAGAGAGATCTATTTTGACCGTCCAACGATGGTCCGTTGCGCCG CCCGCATCGAAGTAGAGCGCGATAGCAGCACTTCCGGTATTGATACCCATGGGATCAAACAGGCATTGGCCGAGCGCTCC TTTCTGATTGGCGAGCACGTCCACCGCAGCCGACTGTATACCCAAATTAATAGCGTCCCAGGCTTTTGGGTGACATCGCT GATGATCGGTAAAGCAGGCCAAGCGTTGTCTGAGCAAAATATTCCTATCGACGTGAGAAGCATGGCGCGCTTTGCAATGA ATGATCTTCAGGTCATTGTGCGATGA
Upstream 100 bases:
>100_bases ATGTGCAAACTATAGTTTGCATGTCGTTAAGTATCAACCACAGTTGATAATGTAAATGAAATGAACGACCACACCCGCCA CCTTGGCGATTGAGTAAACC
Downstream 100 bases:
>100_bases GCTACGCGGACCTGTTGATCTGGCAATACAAGGGCCAACCCAGGGCCACCGCCACCGCTGCATTGATCAGCGATACCTTC AGCACCACCTGGAACGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Protein; Phage Related-Protein; Phage Mu
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MGKVTTSGYEAERLDTIIARLQEGFRSIYGNDINVDPDSPDGQLIGLIAQIKADLEELGTDIHRQLDPDYASGAWLEQRV AYAGLTRRRASYSYLRNVTLTGKPDASIPAGYVVSDPNRCRWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIET VALGWDRAITTEDAEAGAEEEHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVERDSSTSGIDTHGIKQALAERS FLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQNIPIDVRSMARFAMNDLQVIVR
Sequences:
>Translated_381_residues MGKVTTSGYEAERLDTIIARLQEGFRSIYGNDINVDPDSPDGQLIGLIAQIKADLEELGTDIHRQLDPDYASGAWLEQRV AYAGLTRRRASYSYLRNVTLTGKPDASIPAGYVVSDPNRCRWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIET VALGWDRAITTEDAEAGAEEEHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVERDSSTSGIDTHGIKQALAERS FLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQNIPIDVRSMARFAMNDLQVIVR >Mature_380_residues GKVTTSGYEAERLDTIIARLQEGFRSIYGNDINVDPDSPDGQLIGLIAQIKADLEELGTDIHRQLDPDYASGAWLEQRVA YAGLTRRRASYSYLRNVTLTGKPDASIPAGYVVSDPNRCRWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIETV ALGWDRAITTEDAEAGAEEEHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINVI VEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVERDSSTSGIDTHGIKQALAERSF LIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQNIPIDVRSMARFAMNDLQVIVR
Specific function: Unknown
COG id: COG3299
COG function: function code S; Uncharacterized homolog of phage Mu protein gp47
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42139; Mature: 42008
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKVTTSGYEAERLDTIIARLQEGFRSIYGNDINVDPDSPDGQLIGLIAQIKADLEELGT CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DIHRQLDPDYASGAWLEQRVAYAGLTRRRASYSYLRNVTLTGKPDASIPAGYVVSDPNRC HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEECCCCCC RWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIETVALGWDRAITTEDAEAGAEE EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHCCCCH EHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHEEHHHCCCHHHCCCCCCCCCEE IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVER EEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCHHHEEEEEEEEEC DSSTSGIDTHGIKQALAERSFLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCC IPIDVRSMARFAMNDLQVIVR CCEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure GKVTTSGYEAERLDTIIARLQEGFRSIYGNDINVDPDSPDGQLIGLIAQIKADLEELGT CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DIHRQLDPDYASGAWLEQRVAYAGLTRRRASYSYLRNVTLTGKPDASIPAGYVVSDPNRC HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEECCCCCC RWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIETVALGWDRAITTEDAEAGAEE EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHCCCCH EHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHEEHHHCCCHHHCCCCCCCCCEE IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVER EEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCHHHEEEEEEEEEC DSSTSGIDTHGIKQALAERSFLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCC IPIDVRSMARFAMNDLQVIVR CCEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA