Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199050
Identifier: 28199050
GI number: 28199050
Start: 1358111
End: 1359001
Strand: Reverse
Name: 28199050
Synonym: PD1158
Alternate gene names: NA
Gene position: 1359001-1358111 (Counterclockwise)
Preceding gene: 28199052
Following gene: 77747680
Centisome position: 53.93
GC content: 54.32
Gene sequence:
>891_bases GTGCCTGATAGAAAATCTGAACCTGTTGCTTCTTCCATGGGGGTATTAGTGTTGGAATTGGCCGGGGATACGGTGCCTAA GCACGCAGCGTTGCGACCCGATCAGGCGGGGGCGCTGGCTGAGCATGTTGGCTGTGATCTTGCGCAGTGGGTGCCGCAAG TACGTGCTCTAGAACTGAGTTTCGCTGCTGTGCATTTTGACCCGGCTGAGGTATTGCGTCCGGGGTGGCCACTGCACCGG TATCTTGAGGAGTTGCAGGCGCATGTCCCTCAATCTCATCACGGCCCGCGTGTGTTGGCTTTTGGGGAGAATGGAAAGGG AGAAGTGCCATTGCCTTTTACAGCCGACTCGACTTTAAATGTTGGGCGGTTGCGTGTGTTGCCGTTTTTGATTAGCGGTG CCTCCGAGCAGGTTGCTGCAGTGGCTGAAGTTCTGGAAGAGGTATTGCTGACGCAAGGAATGGTTCAGGCGAATACTGCG TTGTTGGCGCAGGCTGCGTTCAGTGCGCAGATTGAGCATGCGCGTTATATGACGGTCCATGATTTGGTTGCGATGATGTC AATACAGTATGACAACCAGGGTCTTGGGATACTGTGGCCACTGTTGGAGGCCGCATTACTATCCCCGCGAGCTGAGGAGT GGTTAGACGCACCACCGCAGCCGCTGTTGCGTTATCGCAGTGGTGAGGTACGGATGGCGTTGTTTGATTTTGTCGGCTGG TGTGCGTATTACCAGCAAGATGGTAGTGACTGTGAGCGGCTAGGTGTGCTTTATGAGCAGTTTTTAGCCCGACAGAGGCA GATGTGTGCAGTATTAGATGCACATGGCGTCATTGTGTCGTATGTGGAAGTCAGACCTGGGCAAGATGCCCGTTTAGCGT TGGCAGCTTGA
Upstream 100 bases:
>100_bases TACCAATGATGGCAACAAGAGGTGCTTCTGTGGGTATTGCGAGATTCAGGGGACAGGCATAATGCCCGCAGTGTAGTTTC CAATCATTGGTAGGCCAATT
Downstream 100 bases:
>100_bases GTGTAGTTTCTCTTTAAACATAGTTTATGTATTCAAGATCATTTGAAATATGGTCTAAAAAGTTCGATAGGTTCCAGATC ATGATTCTCGATGTTTCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MPDRKSEPVASSMGVLVLELAGDTVPKHAALRPDQAGALAEHVGCDLAQWVPQVRALELSFAAVHFDPAEVLRPGWPLHR YLEELQAHVPQSHHGPRVLAFGENGKGEVPLPFTADSTLNVGRLRVLPFLISGASEQVAAVAEVLEEVLLTQGMVQANTA LLAQAAFSAQIEHARYMTVHDLVAMMSIQYDNQGLGILWPLLEAALLSPRAEEWLDAPPQPLLRYRSGEVRMALFDFVGW CAYYQQDGSDCERLGVLYEQFLARQRQMCAVLDAHGVIVSYVEVRPGQDARLALAA
Sequences:
>Translated_296_residues MPDRKSEPVASSMGVLVLELAGDTVPKHAALRPDQAGALAEHVGCDLAQWVPQVRALELSFAAVHFDPAEVLRPGWPLHR YLEELQAHVPQSHHGPRVLAFGENGKGEVPLPFTADSTLNVGRLRVLPFLISGASEQVAAVAEVLEEVLLTQGMVQANTA LLAQAAFSAQIEHARYMTVHDLVAMMSIQYDNQGLGILWPLLEAALLSPRAEEWLDAPPQPLLRYRSGEVRMALFDFVGW CAYYQQDGSDCERLGVLYEQFLARQRQMCAVLDAHGVIVSYVEVRPGQDARLALAA >Mature_295_residues PDRKSEPVASSMGVLVLELAGDTVPKHAALRPDQAGALAEHVGCDLAQWVPQVRALELSFAAVHFDPAEVLRPGWPLHRY LEELQAHVPQSHHGPRVLAFGENGKGEVPLPFTADSTLNVGRLRVLPFLISGASEQVAAVAEVLEEVLLTQGMVQANTAL LAQAAFSAQIEHARYMTVHDLVAMMSIQYDNQGLGILWPLLEAALLSPRAEEWLDAPPQPLLRYRSGEVRMALFDFVGWC AYYQQDGSDCERLGVLYEQFLARQRQMCAVLDAHGVIVSYVEVRPGQDARLALAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32445; Mature: 32313
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDRKSEPVASSMGVLVLELAGDTVPKHAALRPDQAGALAEHVGCDLAQWVPQVRALELS CCCCCCCCHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHEE FAAVHFDPAEVLRPGWPLHRYLEELQAHVPQSHHGPRVLAFGENGKGEVPLPFTADSTLN EEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC VGRLRVLPFLISGASEQVAAVAEVLEEVLLTQGMVQANTALLAQAAFSAQIEHARYMTVH CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DLVAMMSIQYDNQGLGILWPLLEAALLSPRAEEWLDAPPQPLLRYRSGEVRMALFDFVGW HHHHHHHHEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHCCCCEEHHHHHHHHH CAYYQQDGSDCERLGVLYEQFLARQRQMCAVLDAHGVIVSYVEVRPGQDARLALAA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEECC >Mature Secondary Structure PDRKSEPVASSMGVLVLELAGDTVPKHAALRPDQAGALAEHVGCDLAQWVPQVRALELS CCCCCCCHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHEE FAAVHFDPAEVLRPGWPLHRYLEELQAHVPQSHHGPRVLAFGENGKGEVPLPFTADSTLN EEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC VGRLRVLPFLISGASEQVAAVAEVLEEVLLTQGMVQANTALLAQAAFSAQIEHARYMTVH CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DLVAMMSIQYDNQGLGILWPLLEAALLSPRAEEWLDAPPQPLLRYRSGEVRMALFDFVGW HHHHHHHHEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHCCCCEEHHHHHHHHH CAYYQQDGSDCERLGVLYEQFLARQRQMCAVLDAHGVIVSYVEVRPGQDARLALAA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA