Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199037
Identifier: 28199037
GI number: 28199037
Start: 1341390
End: 1342013
Strand: Reverse
Name: 28199037
Synonym: PD1145
Alternate gene names: NA
Gene position: 1342013-1341390 (Counterclockwise)
Preceding gene: 28199038
Following gene: 28199033
Centisome position: 53.26
GC content: 45.83
Gene sequence:
>624_bases GTGATACGGCATTGTGTGGTTATTACTTACTATGCTGCGGTGCAACAGTCAGTGCCAGCGACTCGCAGCGGATGCACCCA GCATCGCTTTCTATTAGAAAATCTTGTGGTAGGTGGAACAGTAAGGACCATTTCATTATGGAAGATGCGTGCACAGCCCG TATCTTTTCTCTATCCCCTGAGCAAGCACCCTGCTGTGCTGGAAGGTGGCAAATCACGGTTGCTCAAGCGGTTTGGATCG TTGAATTACTGGTTGTACGTATTGATGAAGATGAGCAAAGCCAACAATGTGTGCTTGGTTTGTGCTTGTGGTGCCGCTGT GTATGTGGAGTGTGGCGTTAGCATACGACCGCAAGAAAGCGTTTGTCTGACTCTGACAAAGAACGATGTAATTTCCAGAA AGATATTCATTGATGGACGTTGTGAGGCTTATCAGGGAGACAAATCAGCAATAGAAATCACTGTGCTAAAAGGGTGTGCT CGAACAGGTCTGAATATGCTGAGGTCAATATTTGTATGTTCTGGATTGGGGATGGTTGAACTTCCCTGCGTTTTTATAGG ATGTGTGCACCTTTCCAATGTCAATATGCACACATGGTTTCATCTGCTATTGAGCACGGATTGA
Upstream 100 bases:
>100_bases GCCGCAGCGCGGGTTACCGGTACGTTTAGGGGTCTGGCTTGCGATCTGGAGTCATGCTTTCTTCCAGTGTCTGGGTGTGT GGCTGCGTCGGCGTTAACTA
Downstream 100 bases:
>100_bases CGTGTGTTAGCTTTCTGCATTACGAATATGTAATCCGTGATCAGCCTGCATCCTTTCATCTGGATTATCGATAACGACCG GATGCGCTTGCGTGCGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MIRHCVVITYYAAVQQSVPATRSGCTQHRFLLENLVVGGTVRTISLWKMRAQPVSFLYPLSKHPAVLEGGKSRLLKRFGS LNYWLYVLMKMSKANNVCLVCACGAAVYVECGVSIRPQESVCLTLTKNDVISRKIFIDGRCEAYQGDKSAIEITVLKGCA RTGLNMLRSIFVCSGLGMVELPCVFIGCVHLSNVNMHTWFHLLLSTD
Sequences:
>Translated_207_residues MIRHCVVITYYAAVQQSVPATRSGCTQHRFLLENLVVGGTVRTISLWKMRAQPVSFLYPLSKHPAVLEGGKSRLLKRFGS LNYWLYVLMKMSKANNVCLVCACGAAVYVECGVSIRPQESVCLTLTKNDVISRKIFIDGRCEAYQGDKSAIEITVLKGCA RTGLNMLRSIFVCSGLGMVELPCVFIGCVHLSNVNMHTWFHLLLSTD >Mature_207_residues MIRHCVVITYYAAVQQSVPATRSGCTQHRFLLENLVVGGTVRTISLWKMRAQPVSFLYPLSKHPAVLEGGKSRLLKRFGS LNYWLYVLMKMSKANNVCLVCACGAAVYVECGVSIRPQESVCLTLTKNDVISRKIFIDGRCEAYQGDKSAIEITVLKGCA RTGLNMLRSIFVCSGLGMVELPCVFIGCVHLSNVNMHTWFHLLLSTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22968; Mature: 22968
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 9.2 %Cys+Met (Translated Protein) 5.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 9.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRHCVVITYYAAVQQSVPATRSGCTQHRFLLENLVVGGTVRTISLWKMRAQPVSFLYPL CCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEECC SKHPAVLEGGKSRLLKRFGSLNYWLYVLMKMSKANNVCLVCACGAAVYVECGVSIRPQES CCCCHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCEECCCCC VCLTLTKNDVISRKIFIDGRCEAYQGDKSAIEITVLKGCARTGLNMLRSIFVCSGLGMVE EEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCHHH LPCVFIGCVHLSNVNMHTWFHLLLSTD HHHHHHHHHHCCCCCHHHEEEEEEECC >Mature Secondary Structure MIRHCVVITYYAAVQQSVPATRSGCTQHRFLLENLVVGGTVRTISLWKMRAQPVSFLYPL CCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEECC SKHPAVLEGGKSRLLKRFGSLNYWLYVLMKMSKANNVCLVCACGAAVYVECGVSIRPQES CCCCHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCEECCCCC VCLTLTKNDVISRKIFIDGRCEAYQGDKSAIEITVLKGCARTGLNMLRSIFVCSGLGMVE EEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCHHH LPCVFIGCVHLSNVNMHTWFHLLLSTD HHHHHHHHHHCCCCCHHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA