Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199010
Identifier: 28199010
GI number: 28199010
Start: 1313790
End: 1314176
Strand: Reverse
Name: 28199010
Synonym: PD1118
Alternate gene names: NA
Gene position: 1314176-1313790 (Counterclockwise)
Preceding gene: 28199011
Following gene: 28199009
Centisome position: 52.15
GC content: 56.33
Gene sequence:
>387_bases ATGACGCAGTTACCTGCTGCCGTGTGTTTTTCCGGCAAATCCCTTTCCATTATCGACCGTGATGGTGTTCCTCACCTAAG CGCACGCGATCTAGCCCACGCTTTGGGTTACAAAGACACCGTGAGCTTGACCACTGCCCATCGCTGCGGTACCGTCGCTG GTAAGGAGCCTAAGAACTCCGGACAAAGCGGTACCCGCACCCGAAACCCATGCGGTTTTTTTACGCCTGCACGTTTTACG TCGGGAGGGCGGCAGCGATACAAGACCCTTTGGGGAAAGCTGCCCGCCGTCTTTGTCCGGTTTCTTAGCCTCCCGACACC CACAGGTGCGGCGCCTAGGAACGTCTCCCTGTGGTCACCTCTCATGACAAAGGAGACGTTTTTATGA
Upstream 100 bases:
>100_bases GCCCGCCGTCTACTTCCGGTTTCTTAGCCTCCCGACACCCACAGGTGCGGCGCCTAAGAACGTCTCCCCTGTGGTCATCC CATGAAGTAGGAGACGTTTT
Downstream 100 bases:
>100_bases CGCAGTTACCTGCTGCCGTGTGTTTTTCCGGCAAATCCCTTCCCACTATTGATCGTGATGGTGTTCCTCACCTGACGGCT GCCGATCTGGCCCGCGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MTQLPAAVCFSGKSLSIIDRDGVPHLSARDLAHALGYKDTVSLTTAHRCGTVAGKEPKNSGQSGTRTRNPCGFFTPARFT SGGRQRYKTLWGKLPAVFVRFLSLPTPTGAAPRNVSLWSPLMTKETFL
Sequences:
>Translated_128_residues MTQLPAAVCFSGKSLSIIDRDGVPHLSARDLAHALGYKDTVSLTTAHRCGTVAGKEPKNSGQSGTRTRNPCGFFTPARFT SGGRQRYKTLWGKLPAVFVRFLSLPTPTGAAPRNVSLWSPLMTKETFL >Mature_127_residues TQLPAAVCFSGKSLSIIDRDGVPHLSARDLAHALGYKDTVSLTTAHRCGTVAGKEPKNSGQSGTRTRNPCGFFTPARFTS GGRQRYKTLWGKLPAVFVRFLSLPTPTGAAPRNVSLWSPLMTKETFL
Specific function: Unknown
COG id: COG3617
COG function: function code K; Prophage antirepressor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13837; Mature: 13706
Theoretical pI: Translated: 11.13; Mature: 11.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLPAAVCFSGKSLSIIDRDGVPHLSARDLAHALGYKDTVSLTTAHRCGTVAGKEPKNS CCCCCCCEEECCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEEHHCCCCCCCCCCCCCC GQSGTRTRNPCGFFTPARFTSGGRQRYKTLWGKLPAVFVRFLSLPTPTGAAPRNVSLWSP CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LMTKETFL HHHHHCCC >Mature Secondary Structure TQLPAAVCFSGKSLSIIDRDGVPHLSARDLAHALGYKDTVSLTTAHRCGTVAGKEPKNS CCCCCCEEECCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEEHHCCCCCCCCCCCCCC GQSGTRTRNPCGFFTPARFTSGGRQRYKTLWGKLPAVFVRFLSLPTPTGAAPRNVSLWSP CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LMTKETFL HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA