Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is fic [H]
Identifier: 28198904
GI number: 28198904
Start: 1207361
End: 1207972
Strand: Reverse
Name: fic [H]
Synonym: PD1006
Alternate gene names: 28198904
Gene position: 1207972-1207361 (Counterclockwise)
Preceding gene: 28198921
Following gene: 28198901
Centisome position: 47.94
GC content: 48.53
Gene sequence:
>612_bases ATGAAATACGCAGGGGATCGTGGTGATCCTTACCTGGACAGCGAAACAGGTGTTCTTCGTAATCTCCTTGGAATCAGGGA TCAGGGGGGGCTCGATAAAATAGAGTCCACCCTTTCTTTTTTGCGAACCAGCGAATTGCGTGAGCGACCCGTAAAAGGCA AATTTGATCTAGCGCATTTACAGGAAATCCATAATCGTCTTTTCCAGGATGTGTACGACTGGGCGGGTCAAATCCGTCAA GTTGAAATCTCGAAAGGCAACACGATGTTTGCCCAGCAGATTGCGATTCAGAGTGCGGCGCAGCAGATCTTTGGGCAGCT TGCTAAAGAGCGATTTTTGTGTGGCCTTGATGCTGAAGAATTCAGCAAACGGGCAGGTGATTATCTTGGTGAAATTAATG TGCTTCACCCATTCCGCGAGGGAAATGGCAGGACGCAACGGGAATTCATCGCGCAATTGGCTCAGCGTGCAGGTTACCGG ATCGACTGGGGCGTGGTCAGCCAGGCGGATATGATTAAAGCGTCAATCGACGCTTACAACGGGGATTCAAGTGGATTGGC TAGTATCATCCGCGAAGGAATATCTGATCAGCTTTTTAAAGATAATGAGTAA
Upstream 100 bases:
>100_bases ATGCGCAGGCCGTGGTTGATGCTGAATGCTGGGCGCGTGGTGAAATGACTATCGCTGCCGCCGTGGACCAGTACAAAGCG CGTGTTCGGCTCCAGATTGC
Downstream 100 bases:
>100_bases TCCACGAATACTGGAAACAATTCATCTCTTTGAAGAACTGGCAAGGGACATCAAGAAACTCTTTCTAAGTGCTGAATGAG ATAAACGCGCCCACCAATAA
Product: cell filamentation protein
Products: NA
Alternate protein names: Cell filamentation protein fic [H]
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHLQEIHNRLFQDVYDWAGQIRQ VEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEEFSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYR IDWGVVSQADMIKASIDAYNGDSSGLASIIREGISDQLFKDNE
Sequences:
>Translated_203_residues MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHLQEIHNRLFQDVYDWAGQIRQ VEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEEFSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYR IDWGVVSQADMIKASIDAYNGDSSGLASIIREGISDQLFKDNE >Mature_203_residues MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHLQEIHNRLFQDVYDWAGQIRQ VEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEEFSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYR IDWGVVSQADMIKASIDAYNGDSSGLASIIREGISDQLFKDNE
Specific function: Involved in cell filamentation induced by cyclic AMP [H]
COG id: COG2184
COG function: function code D; Protein involved in cell division
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fido domain [H]
Homologues:
Organism=Escherichia coli, GI1789761, Length=193, Percent_Identity=37.3056994818653, Blast_Score=131, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003812 [H]
Pfam domain/function: PF02661 Fic [H]
EC number: NA
Molecular weight: Translated: 22833; Mature: 22833
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHL CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH QEIHNRLFQDVYDWAGQIRQVEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEE HHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH FSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYRIDWGVVSQADMIKASIDAYN HHHHHHHHHHCCHHCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC GDSSGLASIIREGISDQLFKDNE CCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKYAGDRGDPYLDSETGVLRNLLGIRDQGGLDKIESTLSFLRTSELRERPVKGKFDLAHL CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH QEIHNRLFQDVYDWAGQIRQVEISKGNTMFAQQIAIQSAAQQIFGQLAKERFLCGLDAEE HHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH FSKRAGDYLGEINVLHPFREGNGRTQREFIAQLAQRAGYRIDWGVVSQADMIKASIDAYN HHHHHHHHHHCCHHCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC GDSSGLASIIREGISDQLFKDNE CCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2403545; 11677609 [H]