Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28198897
Identifier: 28198897
GI number: 28198897
Start: 1200861
End: 1201559
Strand: Reverse
Name: 28198897
Synonym: PD0999
Alternate gene names: NA
Gene position: 1201559-1200861 (Counterclockwise)
Preceding gene: 28198898
Following gene: 28198896
Centisome position: 47.68
GC content: 65.38
Gene sequence:
>699_bases ATGACTGATCCGCGACGCTTACTGGCTCGTTTGAACCCGAGCACGATCCGCTACGACACGCTACCTGGTGGAGTGCCTGA GTTGACAGCGCAAGACATTGCCCATGCCCTGGGGCTGGTGCCTGCGGGGTTGGGGCGTGAGGTACTGCAAGCGTGCTGGT GGCCGGATGGCGCAGCGTTGCGCCGTAGCCCCTTGCGCGATGCGGCGGTGGCCTTGGTGGTGCCGGAGATTCGACGGCAG CAGCAGCGCTTGCTGGAAGCGCGTACCGATGTGGGCATTGTCAAAGCGTGCATGGGGTGGACCCGAGTAACGACAAGCAC ACAGCAGGCGGCGCTCAGGCGTGCGCAGGAGCGGCTGGACAAGCTCAAAGCCCACCTGTGGCCGCAGGCGACGTTGGAGA TGTTACCGGTACTGGTTGCGGCGGTGGTGGGTGAGCTGTCCACGCCGCAGTTATGCCCCTGCTGTCATGGTCGGGGGGAA CGGCGTGTAGGGGCGTTGGTGAAGGTGTGCACGGCGTGCGGGGGCAGCGGTGCGGTTCCCGCCAGTGACCGCAAGCGTGC CGCTGCCCTTGGCCGGGACGAATCCACCTACCGCACGACATGGCGCGGCCTGTATGAGTGGCTGTTGGAGCGGATGGGTG TTGCGGAACGACAGGCGGCGACGCAGTTGCAAGAGGCATTGCACAGAAATGCCGCGTGA
Upstream 100 bases:
>100_bases GACCAACGTTTATTCAGGTGATGCCTACCTGAGCGCTATGAAGCGCCTGGTGACTGCTTCTGGTCACCGCTTTTGACGTA AAACCCACAGGACATCCGCC
Downstream 100 bases:
>100_bases TGGCTAACGCTGTACTTACCCTCACTTTCCATCCTGGCATTTGCATGATCTTGCAAAGGCAACCATCGAACGTATGAGTC AGGCGCTTTCCCGAGATGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MTDPRRLLARLNPSTIRYDTLPGGVPELTAQDIAHALGLVPAGLGREVLQACWWPDGAALRRSPLRDAAVALVVPEIRRQ QQRLLEARTDVGIVKACMGWTRVTTSTQQAALRRAQERLDKLKAHLWPQATLEMLPVLVAAVVGELSTPQLCPCCHGRGE RRVGALVKVCTACGGSGAVPASDRKRAAALGRDESTYRTTWRGLYEWLLERMGVAERQAATQLQEALHRNAA
Sequences:
>Translated_232_residues MTDPRRLLARLNPSTIRYDTLPGGVPELTAQDIAHALGLVPAGLGREVLQACWWPDGAALRRSPLRDAAVALVVPEIRRQ QQRLLEARTDVGIVKACMGWTRVTTSTQQAALRRAQERLDKLKAHLWPQATLEMLPVLVAAVVGELSTPQLCPCCHGRGE RRVGALVKVCTACGGSGAVPASDRKRAAALGRDESTYRTTWRGLYEWLLERMGVAERQAATQLQEALHRNAA >Mature_231_residues TDPRRLLARLNPSTIRYDTLPGGVPELTAQDIAHALGLVPAGLGREVLQACWWPDGAALRRSPLRDAAVALVVPEIRRQQ QRLLEARTDVGIVKACMGWTRVTTSTQQAALRRAQERLDKLKAHLWPQATLEMLPVLVAAVVGELSTPQLCPCCHGRGER RVGALVKVCTACGGSGAVPASDRKRAAALGRDESTYRTTWRGLYEWLLERMGVAERQAATQLQEALHRNAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25381; Mature: 25249
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDPRRLLARLNPSTIRYDTLPGGVPELTAQDIAHALGLVPAGLGREVLQACWWPDGAAL CCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHH RRSPLRDAAVALVVPEIRRQQQRLLEARTDVGIVKACMGWTRVTTSTQQAALRRAQERLD HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH KLKAHLWPQATLEMLPVLVAAVVGELSTPQLCPCCHGRGERRVGALVKVCTACGGSGAVP HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCC ASDRKRAAALGRDESTYRTTWRGLYEWLLERMGVAERQAATQLQEALHRNAA CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TDPRRLLARLNPSTIRYDTLPGGVPELTAQDIAHALGLVPAGLGREVLQACWWPDGAAL CCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHH RRSPLRDAAVALVVPEIRRQQQRLLEARTDVGIVKACMGWTRVTTSTQQAALRRAQERLD HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH KLKAHLWPQATLEMLPVLVAAVVGELSTPQLCPCCHGRGERRVGALVKVCTACGGSGAVP HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCC ASDRKRAAALGRDESTYRTTWRGLYEWLLERMGVAERQAATQLQEALHRNAA CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA