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The map label for this gene is lycV [H]

Identifier: 28198894

GI number: 28198894

Start: 1199380

End: 1199991

Strand: Reverse

Name: lycV [H]

Synonym: PD0996

Alternate gene names: 28198894

Gene position: 1199991-1199380 (Counterclockwise)

Preceding gene: 28198895

Following gene: 28198893

Centisome position: 47.62

GC content: 54.58

Gene sequence:

>612_bases
GTGCTATGTCCTCATCGAATGATTTACTCGCGCCCTGCCCACCTCAGCAGGGCTTTTTTTTATTCAAAGCCAGCGACCGC
CTTCGGGCGGTTTTTTGCGTACTGGAGTCCCCCCATGCAGACCATTGGTGAAGAAGGCATTGCACTCATCAAGTTTTTTG
AGGGTTGTAAGCTGAGTCCGTACACCTGTCCTGGTGGTGTGTTGACGATTGGCTATGGTGAGACGGGCAAGCACGTCGTA
CCAGGGTTGCGGCTTACCAATGAGCAGGAAGCAGATGCGCGGTTACGTGCACGCTTAGCGAAAGAATTTGAGCCGGCGGT
ACGGCGACATGTGAAGGTGACTTTGGCGCAACATCAATTTGATGCGCTGGTGTCGCTGAGCTTCAACATTGGTGTGGGCG
CGTTTCACCGCTCGACGCTGTTACGCAAGCTTAATGCCGGTGATGTGGCTGGTGCGGCGGAGCAGTTTCATGTGTGGAAA
TGGGCGGGCGGTCGTGTGCAGTCTGGTTTAGTTCGGCGTCGAAAAGCCGAACGTTGGCTATTTGAAGGTAAAGATTGGCA
GGCCGCATTAGCAGCCGAGCATGCGGCGGTGAAGAAGGCATCACGTGATTGA

Upstream 100 bases:

>100_bases
TCAACCGATAAGTATCTGTAGCGATGCAACTACCCTGAGTCGTCGCGTAGTGTTGCATTGATACTGCAACACTTCCCCCC
CTAATCTACGCGCCTGAGTG

Downstream 100 bases:

>100_bases
TATTGCGGCGCTGCCTACCTGGTGGAAGGAGGCGTTTTATGTGTGCTTGGCGATGGCCACGGGGACGCTGAGTTATTTAA
TGCGTGCACTGGACGCTAAG

Product: phage-related lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLCPHRMIYSRPAHLSRAFFYSKPATAFGRFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVV
PGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWK
WAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVKKASRD

Sequences:

>Translated_203_residues
MLCPHRMIYSRPAHLSRAFFYSKPATAFGRFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVV
PGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWK
WAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVKKASRD
>Mature_203_residues
MLCPHRMIYSRPAHLSRAFFYSKPATAFGRFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVV
PGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWK
WAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVKKASRD

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=129, Percent_Identity=37.984496124031, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 22696; Mature: 22696

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCPHRMIYSRPAHLSRAFFYSKPATAFGRFFAYWSPPMQTIGEEGIALIKFFEGCKLSP
CCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCEEHHHHCCCCCCC
YTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQF
CCCCCCEEEEECCCCCCEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGRVQSGLVRRRKAERWL
HHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCHHHHHHHHHHHHHHHH
FEGKDWQAALAAEHAAVKKASRD
CCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLCPHRMIYSRPAHLSRAFFYSKPATAFGRFFAYWSPPMQTIGEEGIALIKFFEGCKLSP
CCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCEEHHHHCCCCCCC
YTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQF
CCCCCCEEEEECCCCCCEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGRVQSGLVRRRKAERWL
HHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCHHHHHHHHHHHHHHHH
FEGKDWQAALAAEHAAVKKASRD
CCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]