Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is crtB [H]
Identifier: 262192850
GI number: 262192850
Start: 2037158
End: 2038228
Strand: Reverse
Name: crtB [H]
Synonym: BMA10247_A2107
Alternate gene names: 262192850
Gene position: 2038228-2037158 (Counterclockwise)
Preceding gene: 126446211
Following gene: 262192877
Centisome position: 86.63
GC content: 69.56
Gene sequence:
>1071_bases ATGACCGACCTGATCCGATCCATGGGCAATTCCACCCGGGCCTTTCTGCTGGGCCCCCTGCTGAAGGGCGTGTCGCGCTC CTTCTATCTGACGTTGCGCGTGCTGCCGCAAGGCATGCGCGACCCGATCGGCCTTGCGTATCTGCTCGCGCGCGCGGCCG ACACGATCGCCGACACGTCGCTGATCCCGCCCGCTCAGCGGCTCGAACTGCTGCTGTCGCTGCGCGCGCAGATCAACGGC GCGCCCGATCCGCACGCGCTCGCGCGGATCGCGGGCGAGGTCGCGGGGCAGCAGGCGCAGACGGACGAGAAGACGCTGCT CGAATCGCTTGGCCCCGCGCTCGCGGTGCTGTCGCAATTGAGCGCGCCCGATCGCGCCGCGGTGCGCGGCGTCGTCACCA CGCTCACCGAAGGGATGGAATTCGATTTGCGCACGTTCCCGGACGAATCGTCGGGCCGCATCGTCGCGCTGCGGGAATGG CCGGCGCTCGATCGCTATACGTATCTCGTTGCCGGCTGCGTCGGCGAATTCTGGACGAAGATGACGTGCGCGCATCTGCC CGGGCTGCTGACCGAGCGGGAGGACACGATGAGCGAGCGCGGCATCCGCTTCGGCAAGGCGCTGCAGATGACCAACGTGC TGCGCGACTGCGGCAGGGACCTGCGGATCGGCCGCTGCTATCTGCCGCAGGCGATGCTGGACGAATACGGGCTGCGCGCG GAGGATCTGCTGGGGCCGGACGCTTCGCTGCGCGTACGGCCGCTGATGCATGCGCTCGTGCGCACGACGCTCGCGCATTT TCGCGCGGGCATCGATTATACGTTCGCGATTCCGCGCCGCGCGCCGCGCCTGCGGCTTGCCTGTTTCTGGCCGATCGCGA TCGGCCTGCGGACGCTCGCGCTGCTCGCGTCGAACGACGCGTGGCTCGATCCGGCGCGCGCGTCGAAGGTGCGGCGCGGC GACGTCTACCGGATCCTCGCGTATTCGCTGCCGCTCGCGATGTCGAACGGCGCGCTGCGCGCGTGGCTCGACCGCCTGAT CGCGGACGTCGAGGCGCGGCTCATCGCGTGA
Upstream 100 bases:
>100_bases CGCGCCGTGCGGCGCGCCCGGTCGCACCCTGCGCGGCCGGCCGTGCGCGAAGCGCCGGCGGCCCGCGCGCATTTGCCGAT ACAATGCGGCAGCCATTCGT
Downstream 100 bases:
>100_bases TGCGCGGCGCGCCCGGCCGCGCGCGTCACGGACGCGTCCACGCCGCCGCCTTTTGCGCGGCATTCCCGCCGCCGAGCGCG TCGATCAGATAATCGACGAA
Product: squalene/phytoene synthase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MTDLIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQING APDPHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRIVALREW PALDRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRA EDLLGPDASLRVRPLMHALVRTTLAHFRAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRG DVYRILAYSLPLAMSNGALRAWLDRLIADVEARLIA
Sequences:
>Translated_356_residues MTDLIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQING APDPHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRIVALREW PALDRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRA EDLLGPDASLRVRPLMHALVRTTLAHFRAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRG DVYRILAYSLPLAMSNGALRAWLDRLIADVEARLIA >Mature_355_residues TDLIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQINGA PDPHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRIVALREWP ALDRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRAE DLLGPDASLRVRPLMHALVRTTLAHFRAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRGD VYRILAYSLPLAMSNGALRAWLDRLIADVEARLIA
Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]
COG id: COG1562
COG function: function code I; Phytoene/squalene synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phytoene/squalene synthase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6321984, Length=321, Percent_Identity=24.2990654205607, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002060 - InterPro: IPR019845 - InterPro: IPR008949 [H]
Pfam domain/function: PF00494 SQS_PSY [H]
EC number: =2.5.1.32 [H]
Molecular weight: Translated: 39245; Mature: 39114
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTS CCHHHHHCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC LIPPAQRLELLLSLRAQINGAPDPHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQL CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHC SAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRIVALREWPALDRYTYLVAGCVGEFWTK CCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH MTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRA HHHHHCCCHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCCCH EDLLGPDASLRVRPLMHALVRTTLAHFRAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLA HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHH LLASNDAWLDPARASKVRRGDVYRILAYSLPLAMSNGALRAWLDRLIADVEARLIA HHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TDLIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTS CHHHHHCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC LIPPAQRLELLLSLRAQINGAPDPHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQL CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHC SAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRIVALREWPALDRYTYLVAGCVGEFWTK CCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH MTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRA HHHHHCCCHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCCCH EDLLGPDASLRVRPLMHALVRTTLAHFRAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLA HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHH LLASNDAWLDPARASKVRRGDVYRILAYSLPLAMSNGALRAWLDRLIADVEARLIA HHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7592436 [H]