Definition | Shewanella oneidensis MR-1, complete genome. |
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Accession | NC_004347 |
Length | 4,969,803 |
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Identifier: 24375986
GI number:
Start: 4700477
End: 4703326
Strand: Direct
Name: Not Available
Synonym: SO_4509
Alternate gene names: NA
Gene position: NA
Preceding gene: 24375985
Following gene: 24375987
Centisome position: NA
GC content: NA
Gene sequence:
>2850_bases ATGCGATTAACCCGCAAAACAGACCCAGTTGTCGAGCCCAAAGTGCCCGCCCTCGGTCTCAATCGTCGCCAATTTTTAAA ATCCGCAGGTCTTGCCACGGGTGGTATTGCTGCGGCTTCAATGCTTGGCACAGGCATGATGCGTAAAGCAGAAGCTAAAG ATATCCCCCACAATGCGCCAACTGAAGTCAAGCGTACCATTTGCTCTCACTGCTCAGTAGGTTGTGGTGTGTATGCAGAA GTGCAAAATGGCGTGTGGACAGGCCAAGAACCTGCATTTGACCACCCCTTCAACCAAGGCGGTCACTGTGCTAAAGGGGC TGCGCTGCGTGAACACGGCCATGGTGAAAAACGCCTTAAATACCCAATGAAATTAGAAGGCGGCAAGTGGAAGAAGATCT CTTGGGATCAGGCCATCAATGAAGTAGGCGATAAAATGATGGCGATTCGTCAAGAATCAGGTCCTGACTCTATCTACTTT ATGGGTAGTGCTAAGTTTTCTAACGAACAGGCTTATTTATATCGCAAATTCGCGGCACTGTGGGGCACAAACAACGTCGA CCACTCAGCCCGCATTTGTCACTCTACCACAGTAGCCGGTGTTGCAAACACATGGGGCTACGGTGCGCAAACCAACTCAG TTAACGATATTCGCCACTCAAAATGTATCTTATTTGTTGGTTCTAACCCCAGTGAAGCGCACCCTGTCGCTATGCAACAC ATTTTGGTAGCTAAAGAGCGCGGCGCCAAAATTATCGTAGTTGATCCTCGTTTCACCCGTACTGCAGCGAAATCTGACGA GTACGTGCATATCCGCCCAGGTACCGATATTCCGTTTATCTATGGCCTGTTATGGCACATTTTTGAAAATGGCTGGGAAG ATAAAGACTTTATCAAGCGCCGCGTTTACGGCATGGAACGTATCCGCGAAGAAGTGAAAAAGTATACTCCAGAAGAAGTT GAAAACGTGGTGGGCGCGCCTAAGGCACAAATGTATCGCGTCGCTAAGATGATGGCTGAAACGAAACCCGGTAGCATTGT ATGGTGCATGGGTGGCACTCAACACCACGTTGGCAACGCTAACACCCGCTCGTACTGTATTTTACAGTTAGCGCTGGGCA ACATGGGTGTTACAGGTGGTGGCACTAACATTTTTCGTGGTCACGATAACGTCCAAGGCGCTTCAGACTTTGGCCTATCG TTTGACGACTTACCCGGCTACTTCGGTTTAACGTCTGGTTCCTGGGCTCACTGGGCAAACGTATGGGACTTAGATCCTAA GTGGGTCACAAGCCGTTTTGATCAAGGTGAGTACTTAGGTCAGTCTCCCCAAACCTCTCCTGGGATCCCATGTTCTCGCT GGCACGATGGTGTACTGGAAGATAAAACCAAGATCGCACAGAAGGATAATATCCGTTTAGCGTTCTTCTGGGGCCAATCG GTCAACACCGAAACTCGTGGCCGCGAAGTACGTCAAGCATTGGATAAAATGGATACAGTGGTAGTTGTCGACCCATTCCC AACCATGGCTGGTGTAATGCACCAACGTAAAGATGGTGTGTATCTGTTACCTGCTGCGACCCAATTTGAAACCTATGGCT CAGTCTCTGCAACTAACCGCTCAATTCAATGGCGCTCTAAAGTGATTGAGCCACTGTTTGAATCACTGCCAGATCACGTG ATTATGTGCAAACTTGCTAAAAAGGTGGGGATTGATAAAGAGCTATTCAAGCATATTAAGGTCAATGGTGAAGAACCGCT GATTGAAGATATTGTCCGTGAATACAACAGAGGTATGTGGACAATTGGCTACACAGGTCAAAGCCCTGAGCGTTTAAAAA TGCACCAAGAAAACTGGGGCACATTTAATGTTGATAGCTTAGAAGCACCTGGTGGCCCAGCCAAAGGTGAGACCTATGGT TTGCCTTGGCCATGCTGGGGTACGCCAGAGATGAAACACCCTGGCTCCCACATTTTGTATAACGAAACAAAGCATGTTAA AGACGGTGGTGGCTCTTTCCGCGCCCGCTTTGGTGTCGAGCGAAATGGCGTCAATCTTCTTTCAGAAGAAGCTTACTCTG CGGGTAGTGAAATCCAAGATGGTTATCCTGAATTTACCGCTGACATGCTCAAGCAATTGGGTTGGTGGGATGATTTAACC GAAGACGAGAAAAAATACGCTGAAGGAAAAAACTGGAAAACAGATATTTCTGGCGGTATTCAACGTGTTGTCATTAAGCA TGGCTGTATTCCCTATGGCAATGGTAAGGCCCGCGCGGTGGTATGGAATTTCCCCGATGATATCCCGCTGCACCGCGAAC CACTTTACACTCCTCGTCGAGACTTAGTCGCTAAGTACCCAACCTACGAAGACCGTATGGTTGCACGTCTACCGACGCTT TATAAGTCCATTCAGGACAAGGACTTTGCCAAAGACTTCCCACTGGCGCTCACATCGGGTCGTTTAGTGGAATACGAAGG CGGTGGTGAAGAAACTCGCTCTAACCCTTGGTTAGCTGAGCTACAACAAGAAATGTTTATCGAAATAAGCCCGGCAGACG CTGCTGACCGTGGTATCCGTGACGGTGACAATGTCTTTGTTCATAGCCCTGAAGGCGCCAAGATCACAGTGAAGGCAATG GTGACACCACGGGTTGTTCCGGGTGAATGTTTTATGCCGTACCACTTCGCAGGGGTATTTGAAGGTGAAAGCCTTGCGAA AAATTATCCTGAAGGCACAGTGCCTTACGTGATAGGCGAATCAGCAAACACCATTTTAACTTATGGCTATGACGTTGTGA CTCAGATGCAAGAAACTAAGTCCAGCCTCTGCCAAATAAGCAAAGCCTAA
Upstream 100 bases:
>100_bases CTGTTGCCCCAAGCGAACCTAAGAGTGACAACTATCGCGAAACCGACCATATCCGTAATTACTATGCGTCGTTGAACAAC TAACCAGAGGAGTGTGTGTG
Downstream 100 bases:
>100_bases CCTACTTGATGAGGAGATAAGCCATTATGGCAGTCATGAAATTTCTATGTGACACCAAACGCTGCATCGAGTGTAACGGC TGCGTCACAGCATGTAAAAA
Product: formate dehydrogenase, alpha subunit
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>949_residues MRLTRKTDPVVEPKVPALGLNRRQFLKSAGLATGGIAAASMLGTGMMRKAEAKDIPHNAPTEVKRTICSHCSVGCGVYAE VQNGVWTGQEPAFDHPFNQGGHCAKGAALREHGHGEKRLKYPMKLEGGKWKKISWDQAINEVGDKMMAIRQESGPDSIYF MGSAKFSNEQAYLYRKFAALWGTNNVDHSARICHSTTVAGVANTWGYGAQTNSVNDIRHSKCILFVGSNPSEAHPVAMQH ILVAKERGAKIIVVDPRFTRTAAKSDEYVHIRPGTDIPFIYGLLWHIFENGWEDKDFIKRRVYGMERIREEVKKYTPEEV ENVVGAPKAQMYRVAKMMAETKPGSIVWCMGGTQHHVGNANTRSYCILQLALGNMGVTGGGTNIFRGHDNVQGASDFGLS FDDLPGYFGLTSGSWAHWANVWDLDPKWVTSRFDQGEYLGQSPQTSPGIPCSRWHDGVLEDKTKIAQKDNIRLAFFWGQS VNTETRGREVRQALDKMDTVVVVDPFPTMAGVMHQRKDGVYLLPAATQFETYGSVSATNRSIQWRSKVIEPLFESLPDHV IMCKLAKKVGIDKELFKHIKVNGEEPLIEDIVREYNRGMWTIGYTGQSPERLKMHQENWGTFNVDSLEAPGGPAKGETYG LPWPCWGTPEMKHPGSHILYNETKHVKDGGGSFRARFGVERNGVNLLSEEAYSAGSEIQDGYPEFTADMLKQLGWWDDLT EDEKKYAEGKNWKTDISGGIQRVVIKHGCIPYGNGKARAVVWNFPDDIPLHREPLYTPRRDLVAKYPTYEDRMVARLPTL YKSIQDKDFAKDFPLALTSGRLVEYEGGGEETRSNPWLAELQQEMFIEISPADAADRGIRDGDNVFVHSPEGAKITVKAM VTPRVVPGECFMPYHFAGVFEGESLAKNYPEGTVPYVIGESANTILTYGYDVVTQMQETKSSLCQISKA
Sequences:
NA
Specific function: NA
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA