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The map label for this gene is ygeV [H]

Identifier: 239618187

GI number: 239618187

Start: 1949794

End: 1951080

Strand: Reverse

Name: ygeV [H]

Synonym: Kole_1823

Alternate gene names: 239618187

Gene position: 1951080-1949794 (Counterclockwise)

Preceding gene: 239618188

Following gene: 239618184

Centisome position: 84.75

GC content: 39.63

Gene sequence:

>1287_bases
ATGTATTACAGAGCAATAACAATTGGAGAATCACTGGATGGAATTAGTGCTTTTGAGCATTTTAATAGTCTCTATGACGT
GGATTTTGACTATCTGATTGGACTCGGCAAAGAAATTCCTACCATCCTGTTTATAGACGGCACGAAACAATTACAGGATA
TAGTAAAGGATTGGCTCTATGCCTTTACCAATATCATTCTCGTCAACAATAACCCCATACGAGTTTTTCTGATCAAGGGT
TATTCGCAGGAATTTCATGAATTCAAAGGATATTACCGCGTTATCGGAAGTTATAAGAGTCCAAGACAAATAGCCGAAGA
TGTAATGAAAAAAATTGAAAAACAACTCTCAAGAATAGTCGGCAAAAGCGAAAAAATTGTGGAACTAAAGAAAATGCTCA
TACTCTCCATGTTTTATGATGGAAGCTTCATGATACTCGGTGAAACAGGAACAGGAAAAAACCTCTTAGCCGAAACCATA
GCCAATTTATCTCCCAGATGGGATAAACCTTTCTACTCACTCAACTGTGCCGCAATTCCGGATACATTACTCGAAAGCGA
GCTCTTCGGCTACAAAAAAGGTGCTTTTACAGGAGCTACAAGCGAAAAGACGGGGTTGATTGAACTGGCCAACACCGGAA
CGTTGTTCCTCGATGAAATCGGAGATATGCCTTTGAATCTTCAGGCCAAAATATTGAGCGTCACCGAAAATCGCGAGTTT
TTCAAAATCGGTTCGACAAAGCCAAAAAAGGTCGATGTCCGCTTCATCACCGCCACAAATAGAACTGAAGACAACGTTCT
AAGGAATGACCTGCGTTTCAGGCTTTCCGCAATAAAGGTCGAACTTCCTCCATTAAGGGAAAGAAAGACGGACATTCCTT
ATATATTCGACAGGATACTCGAGTCGAAGGGTTATCTACTGCGTTTTGAAAGTTTACCCCGGGAGTTAAAACAGCGATTT
CTCAACTACGATTATCCCGGGAATATTAGAGAATTGCTAAACATGATCGAAGAATATCTCGCGGTTAACAACATCCTCTA
TTCGGGTGTGAAAAACAATGTTGAGTCCTATACAAGCATTCTGGCTGAAGAAGCGATAGTTGAAAACACAAATAACGGAA
TTACCTACAAAGATTTTCTGCAAAATTTACACAAGAATATCATGAAAAAAATTCTCGAAAAGCGGCTTAAGTCTCTTGGA
AACGATTTGAATCTTCTATCAAAAGAGTTCGGCCTGACTCCAAGAAGAATCAGGGACTTACTTTCAGAATTCGGATTGAG
AAAATGA

Upstream 100 bases:

>100_bases
CACCAACTTAAAAGATATATTAGCACTTAACGTAAGAAATCCCATGCAGTCGTTGTATAATAAATTGTGTGAAATCAATT
TCCTTATGGAGGAAAAGAAT

Downstream 100 bases:

>100_bases
TGTTCGTTATTTAAAGCACAAATGGTATAACTGGACGTAATGTTCTCTACTTGAAAAGCTCTAATGAATCGTCTATAATA
TCTATTAGTGTACGCCCGTA

Product: sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MYYRAITIGESLDGISAFEHFNSLYDVDFDYLIGLGKEIPTILFIDGTKQLQDIVKDWLYAFTNIILVNNNPIRVFLIKG
YSQEFHEFKGYYRVIGSYKSPRQIAEDVMKKIEKQLSRIVGKSEKIVELKKMLILSMFYDGSFMILGETGTGKNLLAETI
ANLSPRWDKPFYSLNCAAIPDTLLESELFGYKKGAFTGATSEKTGLIELANTGTLFLDEIGDMPLNLQAKILSVTENREF
FKIGSTKPKKVDVRFITATNRTEDNVLRNDLRFRLSAIKVELPPLRERKTDIPYIFDRILESKGYLLRFESLPRELKQRF
LNYDYPGNIRELLNMIEEYLAVNNILYSGVKNNVESYTSILAEEAIVENTNNGITYKDFLQNLHKNIMKKILEKRLKSLG
NDLNLLSKEFGLTPRRIRDLLSEFGLRK

Sequences:

>Translated_428_residues
MYYRAITIGESLDGISAFEHFNSLYDVDFDYLIGLGKEIPTILFIDGTKQLQDIVKDWLYAFTNIILVNNNPIRVFLIKG
YSQEFHEFKGYYRVIGSYKSPRQIAEDVMKKIEKQLSRIVGKSEKIVELKKMLILSMFYDGSFMILGETGTGKNLLAETI
ANLSPRWDKPFYSLNCAAIPDTLLESELFGYKKGAFTGATSEKTGLIELANTGTLFLDEIGDMPLNLQAKILSVTENREF
FKIGSTKPKKVDVRFITATNRTEDNVLRNDLRFRLSAIKVELPPLRERKTDIPYIFDRILESKGYLLRFESLPRELKQRF
LNYDYPGNIRELLNMIEEYLAVNNILYSGVKNNVESYTSILAEEAIVENTNNGITYKDFLQNLHKNIMKKILEKRLKSLG
NDLNLLSKEFGLTPRRIRDLLSEFGLRK
>Mature_428_residues
MYYRAITIGESLDGISAFEHFNSLYDVDFDYLIGLGKEIPTILFIDGTKQLQDIVKDWLYAFTNIILVNNNPIRVFLIKG
YSQEFHEFKGYYRVIGSYKSPRQIAEDVMKKIEKQLSRIVGKSEKIVELKKMLILSMFYDGSFMILGETGTGKNLLAETI
ANLSPRWDKPFYSLNCAAIPDTLLESELFGYKKGAFTGATSEKTGLIELANTGTLFLDEIGDMPLNLQAKILSVTENREF
FKIGSTKPKKVDVRFITATNRTEDNVLRNDLRFRLSAIKVELPPLRERKTDIPYIFDRILESKGYLLRFESLPRELKQRF
LNYDYPGNIRELLNMIEEYLAVNNILYSGVKNNVESYTSILAEEAIVENTNNGITYKDFLQNLHKNIMKKILEKRLKSLG
NDLNLLSKEFGLTPRRIRDLLSEFGLRK

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=245, Percent_Identity=45.7142857142857, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI87082117, Length=242, Percent_Identity=42.9752066115703, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1789087, Length=242, Percent_Identity=42.1487603305785, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1788550, Length=246, Percent_Identity=42.2764227642276, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1790299, Length=238, Percent_Identity=42.436974789916, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1788905, Length=242, Percent_Identity=39.6694214876033, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI1786524, Length=242, Percent_Identity=42.9752066115703, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1790437, Length=232, Percent_Identity=41.3793103448276, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI87082152, Length=247, Percent_Identity=40.080971659919, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI87081872, Length=227, Percent_Identity=40.5286343612335, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1787583, Length=252, Percent_Identity=34.9206349206349, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1789828, Length=336, Percent_Identity=29.7619047619048, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87081858, Length=201, Percent_Identity=30.3482587064677, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 49302; Mature: 49302

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYRAITIGESLDGISAFEHFNSLYDVDFDYLIGLGKEIPTILFIDGTKQLQDIVKDWLY
CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
AFTNIILVNNNPIRVFLIKGYSQEFHEFKGYYRVIGSYKSPRQIAEDVMKKIEKQLSRIV
HHHEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
GKSEKIVELKKMLILSMFYDGSFMILGETGTGKNLLAETIANLSPRWDKPFYSLNCAAIP
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEECHHCC
DTLLESELFGYKKGAFTGATSEKTGLIELANTGTLFLDEIGDMPLNLQAKILSVTENREF
HHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEHHHCCCCCCCEEEEEEEECCCCE
FKIGSTKPKKVDVRFITATNRTEDNVLRNDLRFRLSAIKVELPPLRERKTDIPYIFDRIL
EEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH
ESKGYLLRFESLPRELKQRFLNYDYPGNIRELLNMIEEYLAVNNILYSGVKNNVESYTSI
HCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAEEAIVENTNNGITYKDFLQNLHKNIMKKILEKRLKSLGNDLNLLSKEFGLTPRRIRDL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
LSEFGLRK
HHHCCCCC
>Mature Secondary Structure
MYYRAITIGESLDGISAFEHFNSLYDVDFDYLIGLGKEIPTILFIDGTKQLQDIVKDWLY
CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
AFTNIILVNNNPIRVFLIKGYSQEFHEFKGYYRVIGSYKSPRQIAEDVMKKIEKQLSRIV
HHHEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
GKSEKIVELKKMLILSMFYDGSFMILGETGTGKNLLAETIANLSPRWDKPFYSLNCAAIP
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEECHHCC
DTLLESELFGYKKGAFTGATSEKTGLIELANTGTLFLDEIGDMPLNLQAKILSVTENREF
HHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEHHHCCCCCCCEEEEEEEECCCCE
FKIGSTKPKKVDVRFITATNRTEDNVLRNDLRFRLSAIKVELPPLRERKTDIPYIFDRIL
EEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH
ESKGYLLRFESLPRELKQRFLNYDYPGNIRELLNMIEEYLAVNNILYSGVKNNVESYTSI
HCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAEEAIVENTNNGITYKDFLQNLHKNIMKKILEKRLKSLGNDLNLLSKEFGLTPRRIRDL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
LSEFGLRK
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]