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The map label for this gene is araQ [H]

Identifier: 239617264

GI number: 239617264

Start: 918971

End: 919810

Strand: Reverse

Name: araQ [H]

Synonym: Kole_0873

Alternate gene names: 239617264

Gene position: 919810-918971 (Counterclockwise)

Preceding gene: 239617265

Following gene: 239617263

Centisome position: 39.95

GC content: 39.88

Gene sequence:

>840_bases
ATGATAATAAAAAGAGACTGGAGATACAGGTTACGCCAAACAATCGCATACTCACTTTTGATTTTTTTGCTAATAACAAC
CCTGTTTCCGCTCTATATAATGATTTCAACATCGCTAAAACCTGAGGGCAACATACTCCCAAGCTGGGATACCCTTATCC
CGAAAGAAGTTACATTTAAAAACTATGTTGATGTTTGGAAGAGCGCAAATTTTAACAGGTATTTCCTTAACAGCGTTATT
GTCACTGTGTCCGTTACCATTTTGAATATCATACTCGATTCAATAGTCGCTTACGCATTGTCCAGAAAGAATTTCAAGGG
AGCAAACCTTGTACTTTTGATAATTTTGGCAACAATGATGATCCCCGCACAGGTATTGATGATTCCCCTTTTCATACTCA
TTAAAAAACTCGCAATGTATAACACTTACTGGGCTTTAATACTTCCCTTTGCAGTTCAGGGATTCGGAATTTTTCTTATG
AAGCAATATTTCGACGGACTGCCAAAATCCCTCGACGAAGCTGCTCGAATAGATGGTGGCGGGGATTTCACAATACTTTT
CCGGGTTCTTTTTCCAATCTCCAGGCCAGCAATAGCTGTTCTGGGTATCAATACATTCCTGACCACATGGAACTCGTTCT
TATATCCTTTAATCTTCACGAATACCGATAGCATGCGGACACTTCCGATAGGAATCGCATATTTCAACACACTTCACGGA
ATTGATTACGTTCATTTGATGGCTGGTTCGAGTATTGCGACTATTCCAGTAATTGTGGTTTTTCTGGCCTTTCAGAAACA
AATCATATCCGGTCTGGTCAGAGGGGCTGTTAAAGAATGA

Upstream 100 bases:

>100_bases
ATGGGTTACGCTGCTGCAATGTCTTATGTGTTGTTTATGATCATACTTGCATTTACGCTCATACAGAAGCTGGTTATCAG
ATATCAGAGGTGATATTGAT

Downstream 100 bases:

>100_bases
AAAAAGTAATTTTCTTAATTTTCATCCTTTTAACTACCTCAATATTTGGGGATACGGTGAGAGAACTTGTGGATAACTTT
GATGGATTCGTTGGGATCTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIIKRDWRYRLRQTIAYSLLIFLLITTLFPLYIMISTSLKPEGNILPSWDTLIPKEVTFKNYVDVWKSANFNRYFLNSVI
VTVSVTILNIILDSIVAYALSRKNFKGANLVLLIILATMMIPAQVLMIPLFILIKKLAMYNTYWALILPFAVQGFGIFLM
KQYFDGLPKSLDEAARIDGGGDFTILFRVLFPISRPAIAVLGINTFLTTWNSFLYPLIFTNTDSMRTLPIGIAYFNTLHG
IDYVHLMAGSSIATIPVIVVFLAFQKQIISGLVRGAVKE

Sequences:

>Translated_279_residues
MIIKRDWRYRLRQTIAYSLLIFLLITTLFPLYIMISTSLKPEGNILPSWDTLIPKEVTFKNYVDVWKSANFNRYFLNSVI
VTVSVTILNIILDSIVAYALSRKNFKGANLVLLIILATMMIPAQVLMIPLFILIKKLAMYNTYWALILPFAVQGFGIFLM
KQYFDGLPKSLDEAARIDGGGDFTILFRVLFPISRPAIAVLGINTFLTTWNSFLYPLIFTNTDSMRTLPIGIAYFNTLHG
IDYVHLMAGSSIATIPVIVVFLAFQKQIISGLVRGAVKE
>Mature_279_residues
MIIKRDWRYRLRQTIAYSLLIFLLITTLFPLYIMISTSLKPEGNILPSWDTLIPKEVTFKNYVDVWKSANFNRYFLNSVI
VTVSVTILNIILDSIVAYALSRKNFKGANLVLLIILATMMIPAQVLMIPLFILIKKLAMYNTYWALILPFAVQGFGIFLM
KQYFDGLPKSLDEAARIDGGGDFTILFRVLFPISRPAIAVLGINTFLTTWNSFLYPLIFTNTDSMRTLPIGIAYFNTLHG
IDYVHLMAGSSIATIPVIVVFLAFQKQIISGLVRGAVKE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=269, Percent_Identity=34.2007434944238, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789860, Length=281, Percent_Identity=30.2491103202847, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790464, Length=295, Percent_Identity=26.7796610169492, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31593; Mature: 31593

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKRDWRYRLRQTIAYSLLIFLLITTLFPLYIMISTSLKPEGNILPSWDTLIPKEVTFK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHH
NYVDVWKSANFNRYFLNSVIVTVSVTILNIILDSIVAYALSRKNFKGANLVLLIILATMM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IPAQVLMIPLFILIKKLAMYNTYWALILPFAVQGFGIFLMKQYFDGLPKSLDEAARIDGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
GDFTILFRVLFPISRPAIAVLGINTFLTTWNSFLYPLIFTNTDSMRTLPIGIAYFNTLHG
CCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHCC
IDYVHLMAGSSIATIPVIVVFLAFQKQIISGLVRGAVKE
CCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIKRDWRYRLRQTIAYSLLIFLLITTLFPLYIMISTSLKPEGNILPSWDTLIPKEVTFK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHH
NYVDVWKSANFNRYFLNSVIVTVSVTILNIILDSIVAYALSRKNFKGANLVLLIILATMM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IPAQVLMIPLFILIKKLAMYNTYWALILPFAVQGFGIFLMKQYFDGLPKSLDEAARIDGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
GDFTILFRVLFPISRPAIAVLGINTFLTTWNSFLYPLIFTNTDSMRTLPIGIAYFNTLHG
CCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHCC
IDYVHLMAGSSIATIPVIVVFLAFQKQIISGLVRGAVKE
CCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]