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The map label for this gene is ysmB [H]

Identifier: 239617248

GI number: 239617248

Start: 904142

End: 904603

Strand: Reverse

Name: ysmB [H]

Synonym: Kole_0856

Alternate gene names: 239617248

Gene position: 904603-904142 (Counterclockwise)

Preceding gene: 239617254

Following gene: 239617247

Centisome position: 39.29

GC content: 38.74

Gene sequence:

>462_bases
GTGAAGATAAGTAAAAGAACAGCTAGAGACATAGAACAAACTCTGAGATCCATATACATAAAGATAAAACGTGAAGGAAG
AAAGGTGTTGAAGGACTTTCCCATAACACCTGCCCAATTTGATGTGCTCCAGATACTTTATTTTGGTGGAAAGCGAAGAA
TGAGTGACATAAGCAGGGTACTTGGAATAACAAAAAGTACCACGACAGGTTTGGTATCAAGGCTTATAGATGCAGGATTT
GTGGAGAAGAAGCGTTCTGATGTTGACAGGAGAGCTTACATAATCGATATTTCTGAATCGGGGAGGGCTCTTATCGAAAA
GGTTATCGAAAGAAGGATCGCATACCTTCAAACAGTGCTTTCAAAATTCGATAGAGATAGAGCTAAAGAATTGAAGCAAA
TTTTAAAAGAACTTCTAAACAAGATGGATAGTAGCGAGACTTTAAGGGGGAACGCAAGATGA

Upstream 100 bases:

>100_bases
TTAAAAACATACTTCTATGAGTAGCTTCCCCTGGCATTTTTTGAAGGTTAGGATGTAATGTTATAATTTTTCTAGAACTT
GAAGCAGAGGTGGCGCGATT

Downstream 100 bases:

>100_bases
AGAAAAATATTATTGTTTTGGTTGTTTTTCTTTTGTTGGTATCATTACTGATTGCTGCTGGTACGGTAAAAATAAGGGCG
AAAAATATTGTTGGGTCTAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKISKRTARDIEQTLRSIYIKIKREGRKVLKDFPITPAQFDVLQILYFGGKRRMSDISRVLGITKSTTTGLVSRLIDAGF
VEKKRSDVDRRAYIIDISESGRALIEKVIERRIAYLQTVLSKFDRDRAKELKQILKELLNKMDSSETLRGNAR

Sequences:

>Translated_153_residues
MKISKRTARDIEQTLRSIYIKIKREGRKVLKDFPITPAQFDVLQILYFGGKRRMSDISRVLGITKSTTTGLVSRLIDAGF
VEKKRSDVDRRAYIIDISESGRALIEKVIERRIAYLQTVLSKFDRDRAKELKQILKELLNKMDSSETLRGNAR
>Mature_153_residues
MKISKRTARDIEQTLRSIYIKIKREGRKVLKDFPITPAQFDVLQILYFGGKRRMSDISRVLGITKSTTTGLVSRLIDAGF
VEKKRSDVDRRAYIIDISESGRALIEKVIERRIAYLQTVLSKFDRDRAKELKQILKELLNKMDSSETLRGNAR

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17704; Mature: 17704

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISKRTARDIEQTLRSIYIKIKREGRKVLKDFPITPAQFDVLQILYFGGKRRMSDISRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHH
LGITKSTTTGLVSRLIDAGFVEKKRSDVDRRAYIIDISESGRALIEKVIERRIAYLQTVL
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHH
SKFDRDRAKELKQILKELLNKMDSSETLRGNAR
HHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKISKRTARDIEQTLRSIYIKIKREGRKVLKDFPITPAQFDVLQILYFGGKRRMSDISRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHH
LGITKSTTTGLVSRLIDAGFVEKKRSDVDRRAYIIDISESGRALIEKVIERRIAYLQTVL
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHH
SKFDRDRAKELKQILKELLNKMDSSETLRGNAR
HHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]