Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 239617209

GI number: 239617209

Start: 867391

End: 868047

Strand: Reverse

Name: yggS [C]

Synonym: Kole_0816

Alternate gene names: 239617209

Gene position: 868047-867391 (Counterclockwise)

Preceding gene: 239617214

Following gene: 239617203

Centisome position: 37.71

GC content: 41.1

Gene sequence:

>657_bases
ATGGGAATAAAGGAGAACATTAAGAAGATTCTTTCTGAGATACCGGATTATGTTACCGTCGTTGCTGCAGCTAAAACCCG
AACACCAGAGGAAATATTAGAAGCAATAGAGGCTGGAATAGAAATAATCGGTGAAAACTATGTGCAGGAAGCACAGAAAG
CTTTTGAAGCGGTGGGGAAAAAAGCACAATGGCACATGATAGGTCATCTCCAAAAAAATAAAGTGAAAAAAGCTGTACAG
ATTTTCGACATGATACAGACTGTTGATTCAGTAAAGATAGCAAATGAAATCAACAAGCGTGCTGCACAATTCGGCAAAGT
CATGCCGGTTCTGATAGAGGTCAACAGTGGCAGAGAAGAACAAAAAGCAGGAGTTCTTCCCGAAGATGTTTTTCGGTTAG
TCGAAGAGATCTCTAAACTTGAAAACATTAGAATCGAAGGCTTGATGACGATGGGGCCTGTTGTTGACGCTCCAGAAGAA
CTTCGCCCTTACTTCAGTTTGACCCGTGAGCTGTTTGAGAACCTTTCCAGAGAAAAACTACCGGGAGTCGAGATGAAATG
GTTATCTATGGGTATGTCAGATTCATATAAAATAGCCATTAAAGAAGGCGCAAATATGATAAGGCTTGGAACAATCCTTT
TCGGTCCCAGAAAATGA

Upstream 100 bases:

>100_bases
ATTATATCATCAGGATAGCGAACCACCAATTAATAGAAAATTCGGTTATTTTGTAAAACGTCCCTACTGATTGCGCTATA
ATTTTTATGGAGGTGTTTTA

Downstream 100 bases:

>100_bases
GAGATTAGAACCTTTTTGGTTTCAATATTTCTTCCAGTTTGTCGAAATGCTTACTGAGACGTTCGCTCATGCGTGCTACA
ACTGTTTTGTAAAGGATATC

Product: alanine racemase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MGIKENIKKILSEIPDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQEAQKAFEAVGKKAQWHMIGHLQKNKVKKAVQ
IFDMIQTVDSVKIANEINKRAAQFGKVMPVLIEVNSGREEQKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEE
LRPYFSLTRELFENLSREKLPGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPRK

Sequences:

>Translated_218_residues
MGIKENIKKILSEIPDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQEAQKAFEAVGKKAQWHMIGHLQKNKVKKAVQ
IFDMIQTVDSVKIANEINKRAAQFGKVMPVLIEVNSGREEQKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEE
LRPYFSLTRELFENLSREKLPGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPRK
>Mature_217_residues
GIKENIKKILSEIPDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQEAQKAFEAVGKKAQWHMIGHLQKNKVKKAVQI
FDMIQTVDSVKIANEINKRAAQFGKVMPVLIEVNSGREEQKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEEL
RPYFSLTRELFENLSREKLPGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPRK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=35.2380952380952, Blast_Score=114, Evalue=5e-26,
Organism=Escherichia coli, GI1789321, Length=211, Percent_Identity=34.5971563981043, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17533025, Length=245, Percent_Identity=29.3877551020408, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=229, Percent_Identity=31.4410480349345, Blast_Score=92, Evalue=7e-20,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=32.7014218009479, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24527; Mature: 24396

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKENIKKILSEIPDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQEAQKAFEAVGK
CCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KAQWHMIGHLQKNKVKKAVQIFDMIQTVDSVKIANEINKRAAQFGKVMPVLIEVNSGREE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
QKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEELRPYFSLTRELFENLSREKL
HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPRK
CCCCHHHHHCCCCCCEEEEECCCCCEEEEHHEECCCCC
>Mature Secondary Structure 
GIKENIKKILSEIPDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQEAQKAFEAVGK
CHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KAQWHMIGHLQKNKVKKAVQIFDMIQTVDSVKIANEINKRAAQFGKVMPVLIEVNSGREE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
QKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEELRPYFSLTRELFENLSREKL
HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPRK
CCCCHHHHHCCCCCCEEEEECCCCCEEEEHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]