BacMap

Definition	Kosmotoga olearia TBF 19.5.1, complete genome.
Accession	NC_012785
Length	2,302,126

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The map label for this gene is nodI [H]

Identifier: 239617190

GI number: 239617190

Start: 844823

End: 845452

Strand: Reverse

Name: nodI [H]

Synonym: Kole_0797

Alternate gene names: 239617190

Gene position: 845452-844823 (Counterclockwise)

Preceding gene: 239617191

Following gene: 239617189

Centisome position: 36.72

GC content: 37.3

Gene sequence:

>630_bases
ATGACGGTTGCGTCTATGGAGAATGTATCGTTTTCTTTTGCCAATGGGCCGAAAATATTCGACAACTTCTCGTTGAGCGT
GAAAAAGGGTGAATTTGTTTATATAAAAGGTCTAAACGGTTCCGGGAAGAGTACGCTCTTAAAAATCCTTTGTGGATTAA
TACCTCCAACAACTGGGAATGTTAGCGTTTTTGGAAAAGAACCACATCGTAACCCTGAAATTTTAAAAAGGTTGGGAATA
GTGATTGATGGTATGGGATTATACAGAGAACTTAGCTTGAGAGAAAATATATTACTCTTCGCCAGACAAAAAGGTGTAAC
ACCCGAAATGGCAGAAGAAGCACTGAAAAAATATGTAAGAATGTGGAACATAGATTTCAACAGAAAATACAAGAAATCCT
CCCATGGCATGAGGAAGATAGCTAAATTAACACTCTCGCTGATAAATGATCCTGAACTTCTGATATGGGATGAGCCAGAA
CTCGCACTTGATAAAAAGCGCCATGAAACTTTAGTAAATTTACTTCGTGATTATAAAGAAAACGGTAAAACCTGCATAAT
TGCCGGTACAAATCCAGATATGTATCAAGGCCTCATAGATAGAGTAATAGAAAAAGAGGTGACAATATGA

Upstream 100 bases:

>100_bases
TTCTGAGCCCCTCATTCCACCTGCATTTCAGAAGGCAAGAAATTTGAAAATCATATAGAAAAATATATACTAGTCTTGAA
ACGACTTCGGAGGTGAGAAG

Downstream 100 bases:

>100_bases
GAATTTTATTCAAGCATAGACACTGGATAGTTATACAGGCGATATACCTGATTATTGGTATTTTAAGCGCGTTAATTTTT
AAATCAAACGGAAAAATGTT

Product: ABC transporter related

Products: NA

Alternate protein names: Nodulation ATP-binding protein I [H]

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTVASMENVSFSFANGPKIFDNFSLSVKKGEFVYIKGLNGSGKSTLLKILCGLIPPTTGNVSVFGKEPHRNPEILKRLGI
VIDGMGLYRELSLRENILLFARQKGVTPEMAEEALKKYVRMWNIDFNRKYKKSSHGMRKIAKLTLSLINDPELLIWDEPE
LALDKKRHETLVNLLRDYKENGKTCIIAGTNPDMYQGLIDRVIEKEVTI

Sequences:

>Translated_209_residues
MTVASMENVSFSFANGPKIFDNFSLSVKKGEFVYIKGLNGSGKSTLLKILCGLIPPTTGNVSVFGKEPHRNPEILKRLGI
VIDGMGLYRELSLRENILLFARQKGVTPEMAEEALKKYVRMWNIDFNRKYKKSSHGMRKIAKLTLSLINDPELLIWDEPE
LALDKKRHETLVNLLRDYKENGKTCIIAGTNPDMYQGLIDRVIEKEVTI
>Mature_208_residues
TVASMENVSFSFANGPKIFDNFSLSVKKGEFVYIKGLNGSGKSTLLKILCGLIPPTTGNVSVFGKEPHRNPEILKRLGIV
IDGMGLYRELSLRENILLFARQKGVTPEMAEEALKKYVRMWNIDFNRKYKKSSHGMRKIAKLTLSLINDPELLIWDEPEL
ALDKKRHETLVNLLRDYKENGKTCIIAGTNPDMYQGLIDRVIEKEVTI

Specific function: Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=205, Percent_Identity=28.780487804878, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=190, Percent_Identity=26.8421052631579, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI116734710, Length=184, Percent_Identity=27.7173913043478, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI153792144, Length=160, Percent_Identity=30.625, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262624, Length=189, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262626, Length=189, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI31657092, Length=206, Percent_Identity=25.7281553398058, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI47078218, Length=186, Percent_Identity=25.8064516129032, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45446740, Length=186, Percent_Identity=25.8064516129032, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27477115, Length=163, Percent_Identity=30.0613496932515, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27436953, Length=163, Percent_Identity=30.6748466257669, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI150417984, Length=206, Percent_Identity=25.7281553398058, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI6005701, Length=184, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI27881501, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI171184400, Length=195, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=30.2884615384615, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI87081791, Length=185, Percent_Identity=28.1081081081081, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87081782, Length=160, Percent_Identity=28.125, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789991, Length=198, Percent_Identity=28.2828282828283, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790190, Length=203, Percent_Identity=28.0788177339901, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790467, Length=206, Percent_Identity=25.7281553398058, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786319, Length=192, Percent_Identity=27.6041666666667, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994943, Length=177, Percent_Identity=27.683615819209, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787029, Length=206, Percent_Identity=30.0970873786408, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788761, Length=205, Percent_Identity=25.8536585365854, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI87082267, Length=168, Percent_Identity=25.5952380952381, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI87081834, Length=173, Percent_Identity=31.2138728323699, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788165, Length=174, Percent_Identity=32.183908045977, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=201, Percent_Identity=26.865671641791, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786253, Length=172, Percent_Identity=27.3255813953488, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87081709, Length=179, Percent_Identity=25.1396648044693, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789873, Length=190, Percent_Identity=24.2105263157895, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=24.4444444444444, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082268, Length=211, Percent_Identity=26.5402843601896, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788450, Length=182, Percent_Identity=25.2747252747253, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786563, Length=189, Percent_Identity=27.5132275132275, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788210, Length=180, Percent_Identity=27.2222222222222, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786703, Length=178, Percent_Identity=29.2134831460674, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789586, Length=191, Percent_Identity=27.2251308900524, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788540, Length=205, Percent_Identity=28.780487804878, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787105, Length=195, Percent_Identity=26.1538461538462, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI1787089, Length=199, Percent_Identity=25.1256281407035, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1787370, Length=193, Percent_Identity=23.3160621761658, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1789032, Length=190, Percent_Identity=26.8421052631579, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1787792, Length=194, Percent_Identity=26.2886597938144, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=187, Percent_Identity=28.3422459893048, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24582014, Length=181, Percent_Identity=29.2817679558011, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24582012, Length=181, Percent_Identity=29.2817679558011, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI221512771, Length=190, Percent_Identity=27.8947368421053, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650853, Length=180, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24650855, Length=180, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85725262, Length=176, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24666092, Length=189, Percent_Identity=26.984126984127, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281362751, Length=180, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221500419, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648314, Length=197, Percent_Identity=26.3959390862944, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28571209, Length=195, Percent_Identity=23.5897435897436, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28573571, Length=173, Percent_Identity=26.5895953757225, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28573573, Length=173, Percent_Identity=26.5895953757225, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=197, Percent_Identity=26.3959390862944, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015851
- InterPro:   IPR005978
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23688; Mature: 23557

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVASMENVSFSFANGPKIFDNFSLSVKKGEFVYIKGLNGSGKSTLLKILCGLIPPTTGN
CCCCCCCCCEEEECCCCEEECCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC
VSVFGKEPHRNPEILKRLGIVIDGMGLYRELSLRENILLFARQKGVTPEMAEEALKKYVR
EEEEECCCCCCHHHHHHHHHHEECCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
MWNIDFNRKYKKSSHGMRKIAKLTLSLINDPELLIWDEPELALDKKRHETLVNLLRDYKE
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
NGKTCIIAGTNPDMYQGLIDRVIEKEVTI
CCCEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TVASMENVSFSFANGPKIFDNFSLSVKKGEFVYIKGLNGSGKSTLLKILCGLIPPTTGN
CCCCCCCCEEEECCCCEEECCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC
VSVFGKEPHRNPEILKRLGIVIDGMGLYRELSLRENILLFARQKGVTPEMAEEALKKYVR
EEEEECCCCCCHHHHHHHHHHEECCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
MWNIDFNRKYKKSSHGMRKIAKLTLSLINDPELLIWDEPELALDKKRHETLVNLLRDYKE
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
NGKTCIIAGTNPDMYQGLIDRVIEKEVTI
CCCEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]