Click here to switch to the map view.

The map label for this gene is insD1 [C]

Identifier: 239617177

GI number: 239617177

Start: 834309

End: 835139

Strand: Reverse

Name: insD1 [C]

Synonym: Kole_0784

Alternate gene names: 239617177

Gene position: 835139-834309 (Counterclockwise)

Preceding gene: 239617178

Following gene: 239617176

Centisome position: 36.28

GC content: 41.52

Gene sequence:

>831_bases
GTGGCACTGCTTGTTAATGAGGGATTCAGCGTTTCAGAAGCGCTGAGGTATTTGAAAATCAACCGGAGCACGTATTACTA
CAAGCCTAGGGAATACAGTCGAAGAACAGATGATGAAAAAATACTCAAGGAAATAGAAGAACTCAAAAGAGAGCATCCTT
ACTGGGGATATCGTCGAATCTGGGCGATGTTGAGGAAAAAAGGCAATAAGCTCAACCAAAAGAGGGTATACCGAATAATG
AAAGAAAATGGATTACTCTTCAAAGTTGAGCACAAAAAAGCTTGTAGAACCATTCAAAAGAAAATAAAGCCCACCAGGCC
CAGAGAGGTGCTTGGGATCGACATGACAAAAGTATTCACAAGAGATGCTGGTTGGGCATATTACATAGCAGTGATAGATT
GGTACACAAGAGAAATCCTTGGATCGGAAATAAGTCTCAGGTGTAGAGCAGAAGAATGGTTAAAAGCGTTGGACAGAGCC
TTAAATGAGGGATATCCCGAAGGTGTGCGGGGCGAAGGAGTAATACTGGTGAGCGACAACGGCAGCCAACCAACGAGCAC
GAAGTTCCTGAAAGAATGTACTGTACTTGGGATAAAACAGATATTCACGAGCTACAACAATCCCAAAGGTAATGCCAACA
CGGAAAGGTATTTCAGAACATACAAAGAAGAAGTTGCATGGGTATTGGACAATCCGAGTTACGAAGAGCTAATCGAAAAG
ACGAAAGCTTTTGAAAAGTTTTATAACGAAGAATATCCCCATAGTGCTTTAGGATACAAAAGCCCAAAAGAGATATTCGA
AGAATCCATGAGTCTACACAAAATTGCTTGA

Upstream 100 bases:

>100_bases
TCGAAGAAAAAGTAGAAGAACTCGAGAAGGTAATAGGGAAACAGACCATCGTCATTGAGACATTAAAAAAAACAGTAGTA
CATCCAGGCAACGGGAAATA

Downstream 100 bases:

>100_bases
TTTTTTGTCCAGTTTTTCGGGGAGCATTACATATTGTCCGTGCTTGAAAAGTAAATCTAAGATCTCATAGAGCTTTTTAT
TCAAATTGATCACCCAACAT

Product: Integrase catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MALLVNEGFSVSEALRYLKINRSTYYYKPREYSRRTDDEKILKEIEELKREHPYWGYRRIWAMLRKKGNKLNQKRVYRIM
KENGLLFKVEHKKACRTIQKKIKPTRPREVLGIDMTKVFTRDAGWAYYIAVIDWYTREILGSEISLRCRAEEWLKALDRA
LNEGYPEGVRGEGVILVSDNGSQPTSTKFLKECTVLGIKQIFTSYNNPKGNANTERYFRTYKEEVAWVLDNPSYEELIEK
TKAFEKFYNEEYPHSALGYKSPKEIFEESMSLHKIA

Sequences:

>Translated_276_residues
MALLVNEGFSVSEALRYLKINRSTYYYKPREYSRRTDDEKILKEIEELKREHPYWGYRRIWAMLRKKGNKLNQKRVYRIM
KENGLLFKVEHKKACRTIQKKIKPTRPREVLGIDMTKVFTRDAGWAYYIAVIDWYTREILGSEISLRCRAEEWLKALDRA
LNEGYPEGVRGEGVILVSDNGSQPTSTKFLKECTVLGIKQIFTSYNNPKGNANTERYFRTYKEEVAWVLDNPSYEELIEK
TKAFEKFYNEEYPHSALGYKSPKEIFEESMSLHKIA
>Mature_275_residues
ALLVNEGFSVSEALRYLKINRSTYYYKPREYSRRTDDEKILKEIEELKREHPYWGYRRIWAMLRKKGNKLNQKRVYRIMK
ENGLLFKVEHKKACRTIQKKIKPTRPREVLGIDMTKVFTRDAGWAYYIAVIDWYTREILGSEISLRCRAEEWLKALDRAL
NEGYPEGVRGEGVILVSDNGSQPTSTKFLKECTVLGIKQIFTSYNNPKGNANTERYFRTYKEEVAWVLDNPSYEELIEKT
KAFEKFYNEEYPHSALGYKSPKEIFEESMSLHKIA

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=290, Percent_Identity=28.9655172413793, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789424, Length=290, Percent_Identity=28.9655172413793, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789224, Length=290, Percent_Identity=28.9655172413793, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788305, Length=290, Percent_Identity=28.9655172413793, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787669, Length=290, Percent_Identity=28.9655172413793, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786558, Length=290, Percent_Identity=28.9655172413793, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789981, Length=253, Percent_Identity=27.6679841897233, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR002514 [H]

Pfam domain/function: PF00665 rve; PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 32690; Mature: 32559

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLVNEGFSVSEALRYLKINRSTYYYKPREYSRRTDDEKILKEIEELKREHPYWGYRRI
CEEEECCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH
WAMLRKKGNKLNQKRVYRIMKENGLLFKVEHKKACRTIQKKIKPTRPREVLGIDMTKVFT
HHHHHHHCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCHHHCCHHHHHHH
RDAGWAYYIAVIDWYTREILGSEISLRCRAEEWLKALDRALNEGYPEGVRGEGVILVSDN
CCCCCEEEHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
GSQPTSTKFLKECTVLGIKQIFTSYNNPKGNANTERYFRTYKEEVAWVLDNPSYEELIEK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TKAFEKFYNEEYPHSALGYKSPKEIFEESMSLHKIA
HHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALLVNEGFSVSEALRYLKINRSTYYYKPREYSRRTDDEKILKEIEELKREHPYWGYRRI
EEEECCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH
WAMLRKKGNKLNQKRVYRIMKENGLLFKVEHKKACRTIQKKIKPTRPREVLGIDMTKVFT
HHHHHHHCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCHHHCCHHHHHHH
RDAGWAYYIAVIDWYTREILGSEISLRCRAEEWLKALDRALNEGYPEGVRGEGVILVSDN
CCCCCEEEHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
GSQPTSTKFLKECTVLGIKQIFTSYNNPKGNANTERYFRTYKEEVAWVLDNPSYEELIEK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TKAFEKFYNEEYPHSALGYKSPKEIFEESMSLHKIA
HHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA