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The map label for this gene is araQ [H]

Identifier: 239617078

GI number: 239617078

Start: 731858

End: 732676

Strand: Reverse

Name: araQ [H]

Synonym: Kole_0680

Alternate gene names: 239617078

Gene position: 732676-731858 (Counterclockwise)

Preceding gene: 239617079

Following gene: 239617077

Centisome position: 31.83

GC content: 41.88

Gene sequence:

>819_bases
ATGTTTAAGATATCGACATTTGAGAAAATCATAACCTATGTTATCCTTTGTATCCTCACCATAGTTATGGCAGGTCCCTT
TGTGGCTATGGTATCTGTTTCCTTTCAGGCAAAGCCCGTTTCGTCGCCCGGTGATTGGTTTGGGACGGATCTAACCCTTA
AAAATTACATACAGGTGTTAAGAAATTCCAAATTATCTCGATGGTTTCTCAACAGTGTTATCATCACCGTTAGTGTTACC
GTGTGTGCCACTTTTCTGGCTTCTATGGGTGGTTACGTCTTTGCCAAAAAGGAGTTTCCCGGAAAGGAATTTCTCTTTTG
GGCTTTTATGGCGTTCATGATGTTTCCAATTCAGGCATGGATCATACCCATGTTCATTGAAATGAGCTATCTCGGATTGG
TTAATACCTATTGGCCTTTCATCCTTTCAGGAGCTTCCAGCGGATTCGGAATTTTTTTGATACGACAGTTTATCGATCAG
AATATCCCGAACGAAATAATCGAAGCAGCCAAAATTGACGGCGCATCCGAGATGCAGATCTATTTCAGGGTTGTTCTTCC
CCTGATAAAACCAGCTTTAGCCACTCTAGCTATTTTCCTCTTTATCTCGTGGTGGAATCAGTTCCTTTTCCCGTTGATCA
TGACTACTACATCGGATATGTACACGCTGCCTGTCGGTATGTCGGTTTTAAGGGGGATTTTCGGTCAGAACGTGAGCTGG
TCTATGGCAGCTACAACATTGGCATTGATACCAACGATCGTTATATTCGTTTTATTCCAAAAATATATCACCAAGGGGAT
AGCCATAGATCTTAAGTAA

Upstream 100 bases:

>100_bases
TGAGGATGGGATACGCTTCGGCTGTGGCTATCATACTCTTCGTTATTATTCTTGGATTAAGTATTTTCCAGAAGACCCTT
TTTAGGAGAAGGTGATCTGA

Downstream 100 bases:

>100_bases
ATGGGTGGGGTAATGAAAACACGAAAGAAGGTTCAACTCTATTTTGGAGGTGGTATGTTATGAGTAAGAAATTTGGCGTT
CTGTTAATAAGCCTTTTGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MFKISTFEKIITYVILCILTIVMAGPFVAMVSVSFQAKPVSSPGDWFGTDLTLKNYIQVLRNSKLSRWFLNSVIITVSVT
VCATFLASMGGYVFAKKEFPGKEFLFWAFMAFMMFPIQAWIIPMFIEMSYLGLVNTYWPFILSGASSGFGIFLIRQFIDQ
NIPNEIIEAAKIDGASEMQIYFRVVLPLIKPALATLAIFLFISWWNQFLFPLIMTTTSDMYTLPVGMSVLRGIFGQNVSW
SMAATTLALIPTIVIFVLFQKYITKGIAIDLK

Sequences:

>Translated_272_residues
MFKISTFEKIITYVILCILTIVMAGPFVAMVSVSFQAKPVSSPGDWFGTDLTLKNYIQVLRNSKLSRWFLNSVIITVSVT
VCATFLASMGGYVFAKKEFPGKEFLFWAFMAFMMFPIQAWIIPMFIEMSYLGLVNTYWPFILSGASSGFGIFLIRQFIDQ
NIPNEIIEAAKIDGASEMQIYFRVVLPLIKPALATLAIFLFISWWNQFLFPLIMTTTSDMYTLPVGMSVLRGIFGQNVSW
SMAATTLALIPTIVIFVLFQKYITKGIAIDLK
>Mature_272_residues
MFKISTFEKIITYVILCILTIVMAGPFVAMVSVSFQAKPVSSPGDWFGTDLTLKNYIQVLRNSKLSRWFLNSVIITVSVT
VCATFLASMGGYVFAKKEFPGKEFLFWAFMAFMMFPIQAWIIPMFIEMSYLGLVNTYWPFILSGASSGFGIFLIRQFIDQ
NIPNEIIEAAKIDGASEMQIYFRVVLPLIKPALATLAIFLFISWWNQFLFPLIMTTTSDMYTLPVGMSVLRGIFGQNVSW
SMAATTLALIPTIVIFVLFQKYITKGIAIDLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=203, Percent_Identity=31.5270935960591, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=27.1062271062271, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=27.8301886792453, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30698; Mature: 30698

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]