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The map label for this gene is rbsC [H]

Identifier: 239617003

GI number: 239617003

Start: 650322

End: 651251

Strand: Reverse

Name: rbsC [H]

Synonym: Kole_0603

Alternate gene names: 239617003

Gene position: 651251-650322 (Counterclockwise)

Preceding gene: 239617004

Following gene: 239617002

Centisome position: 28.29

GC content: 44.19

Gene sequence:

>930_bases
ATGTTGAAGAAAATCATTGACTTTTTCAGAAAATTCCCCATAATAGTAGGTTTTCTAGGAATCGTGATTTTATTCAGCAT
TTTGTCTGACCGATTCCTGACGCTGTCAAACTTTCTGAATGTTCTCAGGCAGATTTCCATAAATGCAATCATGGCTTTTG
GTATGACCTTCGTGATATTGTCTGGTGGGATAGACCTTTCGGTAGGCTCTGTTTTTGCCCTTTCGGCAGTTGTGGGAGCT
TCGATTTTGAAGGGCGGATCAATACTTTGGGGTGTGCTTGCCGCCCTCGGTGTCGGAGCCGCTATGGGAACATTCAACGG
TTTTATAATCGCACGAATGAAGCTTCAGCCTTTCATTGTAACACTTTCCACAATGGCAATTGCGAGAAGTTTCACACAGG
TTTACACGCAGGGTAGACCAATAACCGGGTTACCCGCTGCTTTCAGAGAATTTGGTAGAGGTGAATGGCTCCAAGTACCG
ATTCCAATTTATATAATGGCAGGGGTTTTCGTCGCGGGATTCTACATTTTGACAAATACAAAACTCGGGTTATATACGTA
TTCAATAGGTGGGAATGAAGAAGCCACAAGGCTGAGCGGCGTCAAGGTTGACCGTTACAAGGTAATTATTTATATGATTA
GCGGTCTTCTTTCAGCATTGAGTGCACTGATTTTAACAGCAAGGTTGAATAGTGCTCAACCGATATTCGGAATGGGGTAC
GAACTCGATGCGATAGCGGCGGTCGTTTTGGGAGGAACAAGCCTTTCAGGTGGTAAGGGTTCGATAATTGGAACACTATT
TGGGGCTCTGGTAATGGGGATTATAAACAACGGAATGAACCTGGTGAATGTTTCACCATTCTACCAGCAAGCTGTAAAAG
GTGCAGTAATACTGCTCGCCGTTATGGCTGAACGTGCGGGTCAGAAATAA

Upstream 100 bases:

>100_bases
GGGTGCTTGTTATGCACCGGGGAAAGCAAAGGGAAGTTTTTGAACGTTCAGAAATGAGTCAGGAAAAAATTATAGCTGCT
GCTATGGGAGGCTGAAGAGA

Downstream 100 bases:

>100_bases
AAGGGGCTATATGCCCCTATTCTGATAGGGGAGGGTTAAGTATGAAAAAGGTACTGGTGTTATTCAGTTTATTGCTTTTG
GTGTCAGTCTTCGCATTGGG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLKKIIDFFRKFPIIVGFLGIVILFSILSDRFLTLSNFLNVLRQISINAIMAFGMTFVILSGGIDLSVGSVFALSAVVGA
SILKGGSILWGVLAALGVGAAMGTFNGFIIARMKLQPFIVTLSTMAIARSFTQVYTQGRPITGLPAAFREFGRGEWLQVP
IPIYIMAGVFVAGFYILTNTKLGLYTYSIGGNEEATRLSGVKVDRYKVIIYMISGLLSALSALILTARLNSAQPIFGMGY
ELDAIAAVVLGGTSLSGGKGSIIGTLFGALVMGIINNGMNLVNVSPFYQQAVKGAVILLAVMAERAGQK

Sequences:

>Translated_309_residues
MLKKIIDFFRKFPIIVGFLGIVILFSILSDRFLTLSNFLNVLRQISINAIMAFGMTFVILSGGIDLSVGSVFALSAVVGA
SILKGGSILWGVLAALGVGAAMGTFNGFIIARMKLQPFIVTLSTMAIARSFTQVYTQGRPITGLPAAFREFGRGEWLQVP
IPIYIMAGVFVAGFYILTNTKLGLYTYSIGGNEEATRLSGVKVDRYKVIIYMISGLLSALSALILTARLNSAQPIFGMGY
ELDAIAAVVLGGTSLSGGKGSIIGTLFGALVMGIINNGMNLVNVSPFYQQAVKGAVILLAVMAERAGQK
>Mature_309_residues
MLKKIIDFFRKFPIIVGFLGIVILFSILSDRFLTLSNFLNVLRQISINAIMAFGMTFVILSGGIDLSVGSVFALSAVVGA
SILKGGSILWGVLAALGVGAAMGTFNGFIIARMKLQPFIVTLSTMAIARSFTQVYTQGRPITGLPAAFREFGRGEWLQVP
IPIYIMAGVFVAGFYILTNTKLGLYTYSIGGNEEATRLSGVKVDRYKVIIYMISGLLSALSALILTARLNSAQPIFGMGY
ELDAIAAVVLGGTSLSGGKGSIIGTLFGALVMGIINNGMNLVNVSPFYQQAVKGAVILLAVMAERAGQK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=52.5083612040134, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=39.4039735099338, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1790524, Length=288, Percent_Identity=36.8055555555556, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1788896, Length=283, Percent_Identity=36.7491166077738, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789992, Length=362, Percent_Identity=32.5966850828729, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87082395, Length=276, Percent_Identity=34.7826086956522, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI145693214, Length=259, Percent_Identity=35.9073359073359, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788471, Length=280, Percent_Identity=35.7142857142857, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787794, Length=290, Percent_Identity=30.6896551724138, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=29.4736842105263, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32802; Mature: 32802

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKIIDFFRKFPIIVGFLGIVILFSILSDRFLTLSNFLNVLRQISINAIMAFGMTFVIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGGIDLSVGSVFALSAVVGASILKGGSILWGVLAALGVGAAMGTFNGFIIARMKLQPFIV
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
TLSTMAIARSFTQVYTQGRPITGLPAAFREFGRGEWLQVPIPIYIMAGVFVAGFYILTNT
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHEECC
KLGLYTYSIGGNEEATRLSGVKVDRYKVIIYMISGLLSALSALILTARLNSAQPIFGMGY
CEEEEEEECCCCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ELDAIAAVVLGGTSLSGGKGSIIGTLFGALVMGIINNGMNLVNVSPFYQQAVKGAVILLA
CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHH
VMAERAGQK
HHHHHCCCC
>Mature Secondary Structure
MLKKIIDFFRKFPIIVGFLGIVILFSILSDRFLTLSNFLNVLRQISINAIMAFGMTFVIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGGIDLSVGSVFALSAVVGASILKGGSILWGVLAALGVGAAMGTFNGFIIARMKLQPFIV
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
TLSTMAIARSFTQVYTQGRPITGLPAAFREFGRGEWLQVPIPIYIMAGVFVAGFYILTNT
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHEECC
KLGLYTYSIGGNEEATRLSGVKVDRYKVIIYMISGLLSALSALILTARLNSAQPIFGMGY
CEEEEEEECCCCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ELDAIAAVVLGGTSLSGGKGSIIGTLFGALVMGIINNGMNLVNVSPFYQQAVKGAVILLA
CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHH
VMAERAGQK
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]