| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is 239616700
Identifier: 239616700
GI number: 239616700
Start: 318519
End: 319964
Strand: Direct
Name: 239616700
Synonym: Kole_0293
Alternate gene names: NA
Gene position: 318519-319964 (Clockwise)
Preceding gene: 239616698
Following gene: 239616701
Centisome position: 13.84
GC content: 42.12
Gene sequence:
>1446_bases ATGTCAATTGTAGACAGTATGAAGAAAACCATGCTCAAACAAGCTGGAAAATTTGTTGGAAGTGTTGTTAGGAACGCCTC TGAGGAAACGTTGTATAGACTTTTCGCCACTGTAAGTGCAGTGAGCAAAGAACCCGCAAAGGGTGGTCTTAAAAAGCTTG CAAATATGGCGAAGGAAAAACACCCCATGATCCAATCATGGAGACGCGTCTTTCAAAATGCGAATCCCAAGTGTGTTGAA AAGGTTATGACTAACCTTGTAATAAACGAATTTGCCCTCGGTGAAAAGATAAGACAGGAAAAGATGCTTGAGCATGAGGT TGTGCTTCCGAAGTTGCTGGTTATCAGCCCAACGTATGCCTGTAATTTGAATTGTGTTGGTTGTTATGCTGGTCTTTACG GAAGAAAGTATCAGCTCTCCAAAGAAGAAGTTTGGTCTCTCATCAGACAAGCTAATGAGCTTGGAATATACTTCTTTATC ATCACCGGTGGTGAACCCTTTGTATGGCCACATCTCATGGAAACCCTAAAAGAGTTTAACGATAGCTACTTCCAGATCTA TACCAACGGGACATTAATAACCAAAGAAGTTGCTCAGAAACTCGCAGAACTTGGTAATGCCACACCTGCGATATCCGTAG AGGGATTCGAAACAGATACTGACTGGCGAAGAGGTCGCGGTGTTTTCGCAAAAATTTCGGAAGCTTGGAAGAACCTTCGT GAAGCTGGTGTTATCTTTGGAGCTTCTGTTACTGCCACAAGATTAAATCACGACACTATTGTAAAAGAGGAATTTTGGAA TTTCTTAAAAGAAAACGATGTTGCCTATTCTTGGATATTCCAATTTATGCCTGTTGGTATGAATCCATCAATGGACCTTG TGCCAACACCCGAACAAAGATATGAACGTTTCTTCGTACTCGATAAATTGAGACTCGGTGGAGATTTCGCTTTCGTTGCA GATTTTTGGAACCACGGGTTCCTCACCCATGGTTGTCTTGCGGCAGGTTCGAAATACCTCCACATCAATGCTAAAGGTTA TGCTGAACCCTGTGTTTTCCAGCAATTTGCTGTTGACAGCATTAGAGAAAAGAGCCTTCTCGAAATCCTGAAGTCACCAT TCTTCACCGCTTACAAGAGAATGATTCCTTACAGCAACAACTTGTTCAGGCCATGCCCGATTATAGACAATCCGAAGGTT CTAAGAGCTATGGTCAAGAAATTCAACGCTATTCCTCAGCATGAAGGTAGCGAAAAAGTTCTAACCGACCTTGCTCCGGA ACTTGACAAACTTTCAGAAGAATGGGCAAAATACGCTGATAAACTCTGGTACGAATATGGTTACGCTGAAAAATACCCTT CGAAACGTGGTATATACGACTTTGAGGTGAGAATGAACAGATACGCGAACAACGAAGAAAAGCTTGCAATTGATAAGAAA GCCTAG
Upstream 100 bases:
>100_bases CAAAAGAAGAAAATAATTGTTACCAAAATGAACAAATTTTGAAAACCTATGGGTTTACTATTTTACCGACCGGTAAGTAA AAAACTATGGAGGTGATCTG
Downstream 100 bases:
>100_bases CAACCAATATCAGATGGAAAGGTGGTGCCCCCCGGTGCCCCAAAAAACCTCAACAAGGGAAAAGATAATTCTTGCGGCGC GTAAGGCTTTCGCAAAAAAA
Product: Radical SAM domain protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein; Fe-S Oxidoreductase; Radical SAM Family Protein; Fe-S Oxidoreductases; Radical SAM Family Fe-S Protein; AstB/ChuR-Related Protein; Heme Biosynthesis Protein; MoaA/NirJ Family Fe-S Oxidoreductase; MoaA/NifB/PqqE Family Protein; Metallo Cofactor Biosynthesis Protein; Radical SAM Superfamily Protein; Co PQQ Biosynthesis Protein E; Fe-S Osidoreductase; Elongator /MiaB/NifB; Co PQQ Synthesis Protein E; Co PQQ Synthesis Protein; Radical Sam Domain Protein; Fe-S Oxidoreductase Of MoeA/NarA Subfamily; Pyruvate Formate-Lyase Activating; MoeA/NarA Subfamily Fe-S Oxidoreductase; Radical Sam
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MSIVDSMKKTMLKQAGKFVGSVVRNASEETLYRLFATVSAVSKEPAKGGLKKLANMAKEKHPMIQSWRRVFQNANPKCVE KVMTNLVINEFALGEKIRQEKMLEHEVVLPKLLVISPTYACNLNCVGCYAGLYGRKYQLSKEEVWSLIRQANELGIYFFI ITGGEPFVWPHLMETLKEFNDSYFQIYTNGTLITKEVAQKLAELGNATPAISVEGFETDTDWRRGRGVFAKISEAWKNLR EAGVIFGASVTATRLNHDTIVKEEFWNFLKENDVAYSWIFQFMPVGMNPSMDLVPTPEQRYERFFVLDKLRLGGDFAFVA DFWNHGFLTHGCLAAGSKYLHINAKGYAEPCVFQQFAVDSIREKSLLEILKSPFFTAYKRMIPYSNNLFRPCPIIDNPKV LRAMVKKFNAIPQHEGSEKVLTDLAPELDKLSEEWAKYADKLWYEYGYAEKYPSKRGIYDFEVRMNRYANNEEKLAIDKK A
Sequences:
>Translated_481_residues MSIVDSMKKTMLKQAGKFVGSVVRNASEETLYRLFATVSAVSKEPAKGGLKKLANMAKEKHPMIQSWRRVFQNANPKCVE KVMTNLVINEFALGEKIRQEKMLEHEVVLPKLLVISPTYACNLNCVGCYAGLYGRKYQLSKEEVWSLIRQANELGIYFFI ITGGEPFVWPHLMETLKEFNDSYFQIYTNGTLITKEVAQKLAELGNATPAISVEGFETDTDWRRGRGVFAKISEAWKNLR EAGVIFGASVTATRLNHDTIVKEEFWNFLKENDVAYSWIFQFMPVGMNPSMDLVPTPEQRYERFFVLDKLRLGGDFAFVA DFWNHGFLTHGCLAAGSKYLHINAKGYAEPCVFQQFAVDSIREKSLLEILKSPFFTAYKRMIPYSNNLFRPCPIIDNPKV LRAMVKKFNAIPQHEGSEKVLTDLAPELDKLSEEWAKYADKLWYEYGYAEKYPSKRGIYDFEVRMNRYANNEEKLAIDKK A >Mature_480_residues SIVDSMKKTMLKQAGKFVGSVVRNASEETLYRLFATVSAVSKEPAKGGLKKLANMAKEKHPMIQSWRRVFQNANPKCVEK VMTNLVINEFALGEKIRQEKMLEHEVVLPKLLVISPTYACNLNCVGCYAGLYGRKYQLSKEEVWSLIRQANELGIYFFII TGGEPFVWPHLMETLKEFNDSYFQIYTNGTLITKEVAQKLAELGNATPAISVEGFETDTDWRRGRGVFAKISEAWKNLRE AGVIFGASVTATRLNHDTIVKEEFWNFLKENDVAYSWIFQFMPVGMNPSMDLVPTPEQRYERFFVLDKLRLGGDFAFVAD FWNHGFLTHGCLAAGSKYLHINAKGYAEPCVFQQFAVDSIREKSLLEILKSPFFTAYKRMIPYSNNLFRPCPIIDNPKVL RAMVKKFNAIPQHEGSEKVLTDLAPELDKLSEEWAKYADKLWYEYGYAEKYPSKRGIYDFEVRMNRYANNEEKLAIDKKA
Specific function: Unknown
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55178; Mature: 55047
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIVDSMKKTMLKQAGKFVGSVVRNASEETLYRLFATVSAVSKEPAKGGLKKLANMAKEK CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC HPMIQSWRRVFQNANPKCVEKVMTNLVINEFALGEKIRQEKMLEHEVVLPKLLVISPTYA CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCE CNLNCVGCYAGLYGRKYQLSKEEVWSLIRQANELGIYFFIITGGEPFVWPHLMETLKEFN ECCCHHHHHHHHCCCCEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHC DSYFQIYTNGTLITKEVAQKLAELGNATPAISVEGFETDTDWRRGRGVFAKISEAWKNLR CCEEEEEECCEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH EAGVIFGASVTATRLNHDTIVKEEFWNFLKENDVAYSWIFQFMPVGMNPSMDLVPTPEQR HCCEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHH YERFFVLDKLRLGGDFAFVADFWNHGFLTHGCLAAGSKYLHINAKGYAEPCVFQQFAVDS HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH IREKSLLEILKSPFFTAYKRMIPYSNNLFRPCPIIDNPKVLRAMVKKFNAIPQHEGSEKV HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH LTDLAPELDKLSEEWAKYADKLWYEYGYAEKYPSKRGIYDFEVRMNRYANNEEKLAIDKK HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEHHHHCCCCCCCEECCCC A C >Mature Secondary Structure SIVDSMKKTMLKQAGKFVGSVVRNASEETLYRLFATVSAVSKEPAKGGLKKLANMAKEK CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC HPMIQSWRRVFQNANPKCVEKVMTNLVINEFALGEKIRQEKMLEHEVVLPKLLVISPTYA CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCE CNLNCVGCYAGLYGRKYQLSKEEVWSLIRQANELGIYFFIITGGEPFVWPHLMETLKEFN ECCCHHHHHHHHCCCCEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHC DSYFQIYTNGTLITKEVAQKLAELGNATPAISVEGFETDTDWRRGRGVFAKISEAWKNLR CCEEEEEECCEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH EAGVIFGASVTATRLNHDTIVKEEFWNFLKENDVAYSWIFQFMPVGMNPSMDLVPTPEQR HCCEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHH YERFFVLDKLRLGGDFAFVADFWNHGFLTHGCLAAGSKYLHINAKGYAEPCVFQQFAVDS HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH IREKSLLEILKSPFFTAYKRMIPYSNNLFRPCPIIDNPKVLRAMVKKFNAIPQHEGSEKV HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH LTDLAPELDKLSEEWAKYADKLWYEYGYAEKYPSKRGIYDFEVRMNRYANNEEKLAIDKK HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEHHHHCCCCCCCEECCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA